Table 1.
Primer | Positions | Orientation | Nucleotide sequence 5′-3′ | Genotype | Tm (°C) | G + C (%) | Length (bp) |
1 | 25819–25834 | Forward | GGCCTTGGCGGCTACA | M129 | 57.8 | 69 | 16 |
2 | 25820–25834 | Forward | GCCTTGGCGGCTACG | V129 | 55.8 | 73 | 15 |
3 | 25981–26004 | Reverse | CTTGATTGTGATATTGACGCAGTC | D178 | 57.5 | 42 | 24 |
4 | 25981–26004 | Reverse | CTTGATTGTGATATTGACGCAGTT | N178 | 57.0 | 38 | 24 |
5 | 26047–26068 | Reverse | CCATCATCTTAACGTCGGTCTC | E200 | 57.3 | 50 | 22 |
6 | 26047–26068 | Reverse | CCATCATCTTAACGTCGGTCTT | K200 | 56.9 | 45 | 22 |
The polymorphic and mutated bases are in bold and underlined, respectively.