Table 1.

Probabilities of the observed genotype G_k given the autozygosity status and the error and mutation model.

	Probability of Gk when
Observed Genotype Gk	Autozygous at k	Not Autozygous at k
AA	$(1-\epsilon )p_A+\epsilon p_A^2$	$p_A^2$
AB	2εpApB	2pApB
BB	$(1-\epsilon )p_B+\epsilon p_B^2$	$p_B^2$
Missing	1	1

^aε refers to the rate of genotyping errors and mutations.

^bp_A refers to the allele frequency of allele A.