Table 2.
Distribution of functional annotations of unigenes in TB and tomato
| KOG code | Ratio (%) | KOG functional group | |
| TB | Tomato LeGI v12 | ||
| Information storage and processinga | |||
| J | 9.5 | 5.9 | [J] Translation, ribosomal structure, and biogenesis |
| A | 3.3 | 3.8 | [A] RNA processing and modification |
| K | 4.4 | 5.0 | [K] Transcription |
| L | 1.2 | 1.9 | [L] Replication, recombination, and repair |
| B | 1.5 | 1.3 | [B] Chromatin structure and dynamics |
| Cellular processes and signallinga | |||
| D | 1.7 | 2.1 | [D] Cell cycle control, cell division, chromosome partitioning |
| Y | 0.2 | 0.3 | [Y] Nuclear structure |
| V | 0.8 | 0.9 | [V] Defence mechanisms |
| T | 7.4 | 9.4 | [T] Signal transduction mechanisms |
| M | 1.0 | 1.3 | [M] Cell wall/membrane/envelope biogenesis |
| N | 0.0 | 0.0 | [N] Cell motility |
| Z | 2.2 | 2.1 | [Z] Cytoskeleton |
| W | 0.3 | 0.2 | [W] Extracellular structures |
| U | 5.6 | 5.2 | [U] Intracellular trafficking, secretion, and vesicular transport |
| O | 14.0 | 11.1 | [O] Post-translational modification, protein turnover, chaperones |
| Metabolisma | |||
| C | 6.0 | 4.7 | [C] Energy production and conversion |
| G | 5.4 | 5.7 | [G] Carbohydrate transport and metabolism |
| E | 4.0 | 4.6 | [E] Amino acid transport and metabolism |
| F | 0.7 | 1.1 | [F] Nucleotide transport and metabolism |
| H | 0.9 | 1.0 | [H] Coenzyme transport and metabolism |
| I | 3.7 | 4.6 | [I] Lipid transport and metabolism |
| P | 2.1 | 2.6 | [P] Inorganic ion transport and metabolism |
| Q | 4.0 | 4.4 | [Q] Secondary metabolite biosynthesis, transport, and catabolism |
| Poorly characterizeda | |||
| R | 15.4 | 16.3 | [R] General function prediction only |
| S | 4.7 | 4.6 | [S] Function unknown |
a
Four orthologous groups of protein (KOG) subcategories.