Table 2.
Protein-coding and noncoding genes expressed in MSC from UC and UCB tissues
| Exonic | Intronic | All ncRNAs | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| probes | % | AS-TIN | S-TIN | AS-PIN | Other ncRNA | |||||||
| probes | % | probes | % | probes | % | probes | % | probes | % | |||
| On the Array | 13699 | 100 | 7515 | 100 | 7515 | 100 | 4920 | 100 | 662 | 100 | 20612 | 100 |
| Expressed in UC and UCB | 10935 | 80 | 1645 | 22 | 2420 | 32 | 2651 | 54 | 454 | 69 | 7170 | 35 |
| probes | %a | probes | %a | probes | %a | probes | %a | probes | %a | probes | %a | |
| Over-expressed in UC (FDR 5%) | 1054 | 10 | 30 | 2 | 68 | 3 | 118 | 5 | 18 | 4 | 234 | 3 |
| Over-expressed in UCB (FDR 5%) | 816 | 8 | 25 | 2 | 124 | 5 | 51 | 2 | 19 | 4 | 219 | 3 |
| Total differentially expressed | 1870 | 18 | 55 | 4 | 192 | 8 | 169 | 7 | 37 | 8 | 453 | 6 |
UCB umbilical cord blood; UC umbilical cord
aPercent over-expressed probes is calculated in relation to the total number of probes of this category that are expressed in UC and UCB