TABLE 2.
Parameters governing the action of prothrombinase on prothrombin variants
All fitted parameters are listed ± 95% confidence limits.
Substrate variant | Initial rate ± S.D.a | Normalized rate | Ks* ± S.D.b | KE,P ± S.D. | n ± S.D. | kcat320c |
---|---|---|---|---|---|---|
μm/min/nm E | μm | mol of S/mol of E | s−1 | |||
IIWT | 5.73 ± 0.66 | 1.0 | 0.018 ± 0.002 | 58.4 ± 5.1 | 1.04 ± 0.03 | 96 |
IIRR | 5.10 ± 1.15 | 0.89 | 0.13 ± 0.01 | 62.5 ± 2.5 | 0.98 ± 0.02 | 97 |
IIRGR | 4.65 ± 0.71 | 0.81 | 0.25 ± 0.01 | 58.8 ± 3.0 | 1.02 ± 0.04 | 100 |
II-1δ | 3.93 ± 0.47 | 0.69 | 0.31 ± 0.01 | 45.9 ± 0.9 | 1.20 ± 0.02 | 89 |
II-2δ | 2.65 ± 0.61 | 0.46 | 0.41 ± 0.01 | 57.6 ± 1.6 | 1.03 ± 0.02 | 66 |
II-3δ | 0.80 ± 0.25 | 0.14 | 0.88 ± 0.03 | 54.5 ± 2.0 | 1.08 ± 0.03 | 0 |
II-4δ | 0.69 ± 0.24 | 0.12 | 3.4 ± 0.12 | 69.4 ± 2.5 | 0.90 ± 0.03 | 0 |
IIQ320 | 0.24 ± 0.08 | 0.04 | 4.3 ± 0.11 | 69.7 ± 1.7 | 0.90 ± 0.02 | 0 |
a Initial rates represent those for the total rate of prothrombin consumption determined from progress curves illustrated in Fig. 4.
b Fitted parameters determined from fluorescence binding measurements with pAB represent the unimolecular equilibrium constant for active site docking (wherein Ks* = k−/k+), the equilibrium dissociation constant for the binding of the probe to prothrombinase assembled with XaS195A (KE,P), and the stoichiometry reflecting moles of substrate engaging the active site at saturation.
c kcat320 reflects the intrinsic kcat for the action of prothrombinase in the 320 region and was calculated from initial rate using Equation 1.