Skip to main content
. 2009 Oct 26;285(1):328–338. doi: 10.1074/jbc.M109.070334

TABLE 2.

Parameters governing the action of prothrombinase on prothrombin variants

All fitted parameters are listed ± 95% confidence limits.

Substrate variant Initial rate ± S.D.a Normalized rate Ks* ± S.D.b KE,P ± S.D. n ± S.D. kcat320c
μm/min/nm E μm mol of S/mol of E s1
IIWT 5.73 ± 0.66 1.0 0.018 ± 0.002 58.4 ± 5.1 1.04 ± 0.03 96
IIRR 5.10 ± 1.15 0.89 0.13 ± 0.01 62.5 ± 2.5 0.98 ± 0.02 97
IIRGR 4.65 ± 0.71 0.81 0.25 ± 0.01 58.8 ± 3.0 1.02 ± 0.04 100
II-1δ 3.93 ± 0.47 0.69 0.31 ± 0.01 45.9 ± 0.9 1.20 ± 0.02 89
II-2δ 2.65 ± 0.61 0.46 0.41 ± 0.01 57.6 ± 1.6 1.03 ± 0.02 66
II-3δ 0.80 ± 0.25 0.14 0.88 ± 0.03 54.5 ± 2.0 1.08 ± 0.03 0
II-4δ 0.69 ± 0.24 0.12 3.4 ± 0.12 69.4 ± 2.5 0.90 ± 0.03 0
IIQ320 0.24 ± 0.08 0.04 4.3 ± 0.11 69.7 ± 1.7 0.90 ± 0.02 0

a Initial rates represent those for the total rate of prothrombin consumption determined from progress curves illustrated in Fig. 4.

b Fitted parameters determined from fluorescence binding measurements with pAB represent the unimolecular equilibrium constant for active site docking (wherein Ks* = k/k+), the equilibrium dissociation constant for the binding of the probe to prothrombinase assembled with XaS195A (KE,P), and the stoichiometry reflecting moles of substrate engaging the active site at saturation.

c kcat320 reflects the intrinsic kcat for the action of prothrombinase in the 320 region and was calculated from initial rate using Equation 1.