Table 2.
TCF7 SNPs studied
| Marker | Name | Position | HW P value founders | % Call rate | Number of trios | MAF | Alleles (major:minor) |
|---|---|---|---|---|---|---|---|
| 1 | rs30503 | 133465245 | 0.36 | 97.9 | 1541 | 12.7% | C:G |
| 2 | rs30500 | 133467775 | 0.03 | 96.2 | 1492 | 18.4% | C:T |
| 3 | rs30499 | 133469625 | 0.08 | 99.4 | 1584 | 23.5% | A:G |
| 4 | rs244948 | 133472960 | 0.16 | 98.6 | 1554 | 13.6% | G:A |
| 5 | rs5742913 (ss93257904) | 133479582 | 0.72 | 98.6 | 1568 | 11.6% | C:A |
| 6 | rs244692 | 133480434 | 0.16 | 98.5 | 1563 | 8.3% | A:G |
| 7 | rs151822 | 133483860 | 0.08 | 99.3 | 1576 | 23.1% | T:C |
| 8 | rs152404 | 133486613 | 0.13 | 98.8 | 1564 | 14.7% | T:C |
| 9 | rs152406 | 133489485 | 1.00 | 99.6 | 1597 | 5.2% | G:A |
| 10 | rs249611 | 133492556 | 0.88 | 99.6 | 1586 | 8.5% | A:G |
| 11 | rs17653687 | 133495899 | 0.19 | 98.5 | 1555 | 16.2% | A:G |
Abbreviations: MAF, minor allele frequency; SNP, single-nucleotide polymorphism.
Designations for the two single nucleotide polymorphisms that showed type I diabetes association are shown in bold.