Table 1.
PTD test for 15 SNPs in the SUMO4 interval in all families
| SNP | Illumina |
Sequenom |
|||||
|---|---|---|---|---|---|---|---|
| A1:A2* | T:U_PDT | Aff:UnafSib | P_PDT | T:U_PDT | Aff:UnafSib | P_PDT | |
| rs12204461 | A:T | 4387:4315 | 2418:2422 | ns | 4649:4601 | 2442:2447 | ns |
| rs7742990 | G:A | 757:697 | 410:390 | 0.0208 | 682:667 | 394:387 | ns |
| rs9373589 | A:G | 4057:4025 | 2091:2129 | ns | 3954:3901 | 2009:2034 | ns |
| rs9404034 | C:G | 650:645 | 403:368 | ns | 674:661 | 399:372 | ns |
| rs2789490 | C:G | 644:633 | 400:365 | ns | 633:618 | 395:369 | ns |
| rs237032 | G:A | 757:699 | 410:389 | 0.0145 | 107:143 | 112:116 | ns |
| rs237025 | A:G | 3048:3022 | 1695:1635 | ns | 3035:3026 | 1661:1605 | ns |
| rs2789488 | G:A | 3941:3916 | 2022:2064 | ns | 2303:2320 | 1205:1194 | ns |
| rs2789489 | A:T | 648:645 | 398:364 | ns | 659:640 | 398:373 | ns |
| rs652921 | T:C | 646:642 | 400:365 | ns | 641:638 | 372:347 | ns |
| rs366905 | A:T | 2976:2955 | 1658:1601 | ns | 2866:2873 | 1543:1502 | ns |
| rs480034 | T:C | 4050:4020 | 2091:2129 | ns | 3777:3745 | 2011:2041 | ns |
| rs236999 | A:G | 759:702 | 410:390 | 0.0202 | 728:703 | 392:385 | 0.0729 |
| rs513923 | G:A | 636:626 | 407:368 | ns | 669:660 | 399:374 | ns |
| rs9485389 | C:A | 4697:4649 | 2496:2499 | ns | 4595:4554 | 2409:2426 | ns |
*
A1 allele is the transmitted allele.