Table 15.

Performance of methods on families of the full-length sequence data set. Only AMPS, CLUSTALW and PRRP were able to align all families in this set.

Methods	Percentage Identity Range					Overall
	0–10	10–20	20–30	30–50	50–100
AMPS	4.1	33.8	70.9	83.7	97.8	80.33
CLUSTALW	5.3	36.0	70.2	84.5	97.6	80.65
PILEUP	7.7	36.2	69.9	83.1	97.9	80.45
PRRP	8.3	27.6	64.6	81.3	96.2	77.63
PIMA	4.8	34.4	68.5	84.2	97.8	80.28
N. Family	23	62	71	179	269	604