Table 16.

Maximum accuracy achievable over all methods on each family. AMPS (Opt): results for AMPS with BLOSUM75/10 parameters. AMPS (Max): result of taking the most accurate alignment for each family over all tested parameter combinations. All Methods (Max): result of taking the most accurate alignment over AMPS (Max) and alignments by all other methods.

Methods	Percentage Identity Range					Overall
	0–10	10–20	20–30	30–50	50–100
AMPS (Opt)	22.17	60.25	81.27	92.33	98.93	89.85
AMPS (Max)	47.41	75.15	89.29	95.96	99.38	93.85
All Methods (Max)	52.48	77.75	90.83	96.41	99.43	94.52