Table 2.
Summary of SAXS and AUC data
Sample (molecular weight kDaa) | SAXSb |
AUCc |
|||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Rg (nm) | Dmax (nm) | Vp (nm3) | Molecular weight (kDa) | s20xw (S) | χs | χRB | s20,w (S) | Molecular weight (kDa) | (ml g− 1) | % mono | Fc(M) | Fs, M | f/fmin | Axial ratio | |
fH12–13 (13.6) | 2.2 ± 0.1 | 7.1 ± 0.5 | 20 ± 2.5 | 19 ± 2 | 1.6 ± 0.1 | 1.58 | 1.24 | 1.74 ± 0.03 | 16.8 ± 0.8 | 0.724 | 80 ± 1 | 1.33 | 1.20 | 1.00 | 1.00 |
fH11–14 (27.3) | 3.1 ± 0.1 | 10.5 ± 0.5 | 38 ± 7 | 35 ± 4 | 2.5 ± 0.2 | 1.43 | 1.18 | 2.25 ± 0.04 | 26.5 ± 1.3 | 0.725 | 99 ± 1 | 1.42 | 1.48 | 1.23 | 4.75 |
fH10–15 (41.1) | 3.1 ± 0.1 | 10.4 ± 0.5 | 68 ± 13 | 46 ± 6 | 3.4 ± 0.2 | 0.81 | 1.30 | 3.19 ± 0.05 | 40.5 ± 2.0 | 0.725 | 97 ± 1 | 1.35 | 1.37 | 1.14 | 3.39 |
Molecular weights calculated from sequence.
Rg, Dmax, and Vp are the experimentally (SAXS) determined radius of gyration, maximum particle dimension, and hydrated particle volume, respectively. s20xw is the sedimentation coefficient computed from the SAXS bead models. χs and χRB are the discrepancies between the experimental data and the computed scattering curves from the most typical ab initio and rigid-body models, respectively. The χRB shown for fH12–13 is the value of the best-fit NMR model to the SAXS data calculated using CRYSOL.
s20,w, , and % mono are the experimentally (AUC) determined sedimentation coefficient, partial specific volume, and percent monomer in the sample, respectively. Fc(M) is the frictional ratio [calculated from the initial c(s⁎) fit]. Fs,M is the frictional ratio calculated from the sedimentation coefficient and the known (from sequence) molecular mass. f/fmin is the component of the frictional ratio that can be attributed to shape, on the basis that for a non-extended ‘globular’ protein, a value F = 1.20 (default value in SEDFIT) is generally applicable (for the computation of f/fmin, the second and more reliable of the two estimates for f/f0 has been divided by 1.20).