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. 2009 Dec 23;10:630. doi: 10.1186/1471-2164-10-630

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Copyright ©2009 Jun et al; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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One example of many-to-many Inparanoid ortholog groups where RT events followed the mouse-rat speciation. The Ensembl gene IDs of GOI are ENSMUSG00000013701 (Mm1), ENSMUSG00000069622 (Mm2) and ENSRNOG00000019811 (Rn1), ENSRNOG00000032900 (Rn2). The gene structures and neighboring gene orders of four Timm23 genes in mouse and rat genomes are shown. The event tree on the left side is predicted based on the local synteny. RT: retrotransposition. Genes are shown corresponding to the strand of GOI in order to show the homology between neighboring genes. Homology between two neighboring genes are defined by Blastp E-value < 1e-5.