Table 3.
Contigs and single reads of Rhagoletis pomonella odorant binding proteins (OBPs) and other candidate transcripts for odor reception†.
| Match | ID | Aa | %I | bp | Read/Contig |
|---|---|---|---|---|---|
| OBP 19a | 11748 | 105 | 63.8 | 602 (15) | C10486 [EZ126705] |
| OBP 19b | 2297 | 120 | 41.6 | 578 (29) | C21814 [EZ138033] |
| OBP 44a | 2297 | 125 | 65. | 934 (159) | C21478 [EZ137697] |
| OBP 49a | 30052 | 40 | 50.0 | 213 (4) | C02098 [EZ118317 |
| OBP 50e | 13939 | 43 | 41.8 | 233 (3) | C15401 [EZ131620] |
| 51 | 49.0 | 264 | E7OMS0H01BS27Q | ||
| OBP 56a | 11797 | 94 | 27.6 | 436 (70) | C23516 [EZ139735] |
| OBP 56d | 11218 | 123 | 38.2 | 532 (35) | C00020 [EZ116239] |
| OBP 56 h | 13874 | 112 | 37.5 | 642 (73) | C22766 [EZ138985] |
| OBP 59a | 13517 | 47 | 63.8 | 215 | E7OMS0H02EEDPG |
| OBP 83cd | 15582 | 126 | 47.6 | 886 (20) | C20125 [EZ136344] |
| OBP 83ef | 31557 | 217 | 49.7 | 1395 (71) | C20870 [EZ137089] |
| OBP 83 g | 31558 | 59 | 57.6 | 474 (44) | C20023 [EZ136242] |
| OBP 99b | 7592 | 123 | 53.6 | 536 (244) | C19484 [EZ135703] |
| OBP 99c | 7584 | 139 | 57.5 | 759 (76) | C22673 [EZ138892] |
| OBP 99d | 15505 | 51 | 45.1 | 613 (10) | C02834 [EZ119053] |
| Pbprp 1* | 10436 | 42 | 50.0 | 286 (21) | C23956 [EZ140175] |
| 30 | 46.0 | 190 (11) | C22750 [EZ138969] | ||
| Pbprp 2 | 1668 | 150 | 25.0 | 800 (52) | C23271 [EZ139490] |
| Similar to Pbprp 2* | 1668 | 106 | 38.6 | 520 (73) | C14712 [EZ130931] |
| Pbprp 3* | 11421 | 18 | 72.0 | 241 (2) | C02940 [EZ119159] |
| 144 | 68.0 | 410 (4) | C08103 [EZ124322] | ||
| Pbprp 4* | 1176 | 124 | 54.8 | 737 (60) | C22809 [EZ139028] |
| Pbprp 5* | 6641 | 128 | 34.3 | 820 (136) | C22963 [EZ139182] |
| Similar to Pbprp 5* | 6641 | 63 | 44.4 | 351 (6) | C16946 [EZ133165] |
| Sensory neuron membrane protein 1 | 7000 | 81 | 75.0 | 257 | E7OMS0H01CAV8S |
| 92 | 73.0 | 276 (5) | C07451 [EZ123670] | ||
| G protein salpha 60A | 2835 | 274 | 93.0 | 1538 (30) | C08446 [124665] |
| Arrestin 2 | 5962 | 168 | 97.0 | 807 (91) | C15900 [EZ132119] |
| 56 | 89.0 | 265 | E7OMS0H02EWNVX | ||
| Arrestin 1 | 5711 | 260 | 92.0 | 1306 (79) | C00173 [EZ116392] |
| Pherokine 3 | 9358 | 113 | 66.0 | 442 (21) | C02839 [EZ119058] |
| Putative chemosensory protein CSP1 | 30172 | 93 | 75.0 | 485 (25) | C23468 [EZ139687] |
| Cytochrome P450 reductase | 11567 | 140 | 83.0 | 1253 (80) | C22056 [EZ138275] |
†Contigs and reads matching the same D. melanogaster locus map to different regions of the Drosophila gene. Match is the D. melanogaster locus name for the closest match, CG is the Celera Genome number of the match, aa is the number of amino acids in the single read or contig, %I is the percent aa match between the R. pomonella and D. melanogaster homologous proteins, bp is the base pair length of the single read or contig (number of sequences contributing to contig), Read/Contig is the R. pomonella ID in our data base and the GenBank TSA Accession number.
*Homologous sequence also found in the congener R. suavis.