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. 2009 Oct 28;3:141–154. doi: 10.4137/bbi.s3030

Table 2.

UFM diagnosis of coding strand in CDSs with size (Bp) varying between 150 and 400 bp in the species (Sp) H. sapiens (Hs), D. melanogaster (Dm) and A. thaliana (At). The sample size (N) was 1000 throughout the experiment.

Sp Bp N ΔF + ≥11 Bp + = Bp−2 ΔF −≥ 13 F + 114 F−115 Fr−16 Fr−2 Fr−3 Fr+1Fr−1 F+1 < F−1 Fr−1 Fr−2 Fr−3
Hs 400 1000 1000 202 202 1000 178 122 44 12 981 197 6 12 1
Dm 1000 1000 214 214 998 204 161 37 6 979 20 10 7 3
At 1000 1000 30 30 999 29 21 8 0 992 7 5 2 0
Hs 350 1000 1000 254 254 999 223 151 56 16 971 29 8 20 1
Dm 1000 1000 264 264 999 257 197 50 10 973 26 14 9 3
At 1000 1000 50 50 998 49 33 15 0 993 5 4 1 0
Hs 300 1000 1000 314 314 999 271 179 72 20 957 43 14 26 1
Dm 1000 1000 342 342 999 327 241 71 15 961 38 17 16 5
At 1000 1000 97 97 998 96 56 33 7 962 19 7 10 2
Hs 250 1000 1000 388 388 998 326 211 92 23 943 57 15 38 4
Dm 1000 1000 428 428 997 406 301 90 15 946 54 25 24 5
At 1000 1000 152 152 996 146 79 59 8 981 36 14 19 3
Hs 200 1000 1000 538 538 996 460 273 152 35 900 100 32 60 8
Dm 1000 1000 566 566 992 519 354 133 32 926 72 32 36 4
At 1000 1000 249 249 993 242 124 98 20 929 69 28 35 6
Hs 150 1000 1000 699 699 994 590 333 198 59 842 158 53 87 18
Dm 1000 1000 723 723 986 651 398 204 49 865 135 44 82 9
At 1000 1000 430 430 989 412 186 183 43 868 129 40 70 19
1

“ΔF+” is for PBI considering the “+” strand.

2

“Bp+ = Bp−” is to indicate that ORF size is the same for “+” and “−” strands.

3

“ΔF−” is for PBI considering the “−” strand.

4

“F+1” is for f1 considering the “+” strand.

5

“F−1” is for f1 considering the “−” strand.

6

“Fr−” is for the real frame of the CDS, i.e. Fr−1 for frame −1, Fr −2 for frame −2 and Fr −3 for frame −3, respectively,

7

The gray area is for error rate of coding frame diagnosis ≤5%.