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. 2009 Feb 18;3:15–28. doi: 10.4137/bbi.s2065

Table 4.

Cell wall-related protein families of Arabidopsis annotated by experts.

Cell wall protein families Curated annotation
Prolyl-4-hydroxylases http://cellwall.genomics.purdue.edu/families/4-6-5.html
Nucleotide-sugar interconversion pathway http://cellwall.genomics.purdue.edu/families/1-1.html Reiter and Vanzin30
GT8 http://cellwall.genomics.purdue.edu/families/2-3-1.htmlhttp://www.cazy.org/fam/GT8.html
GT31 http://cellwall.genomics.purdue.edu/families/2-3-5.htmlhttp://www.cazy.org/fam/GT31.html
GT34 http://cellwall.genomics.purdue.edu/families/2-3-4.htmlhttp://www.cazy.org/fam/GT34.html
GT37 http://cellwall.genomics.purdue.edu/families/1-1.htmlhttp://www.cazy.org/fam/GT37.html
GT47 http://cellwall.genomics.purdue.edu/families/2-3-2.htmlhttp://www.cazy.org/fam/GT47.html
GT77 http://www.cazy.org/fam/GT77.html Egelund et al.31
GT2 (cellulose synthases) http://cellwall.genomics.purdue.edu/families/2-2.htmlhttp://www.cazy.org/fam/GT2.html
GT2 (cellulose synthases-like) http://cellwall.genomics.purdue.edu/families/2-2.htmlhttp://www.cazy.org/fam/GT2.html
GT48 (callose synthases) http://cellwall.genomics.purdue.edu/families/2-4.htmlhttp://www.cazy.org/fam/GT48.html
Vesicle trafficking (emp24/gp25L/p24 family protein) http://cellwall.genomics.purdue.edu/families/3-1.html
GH9 (endoglucanases) http://cellwall.genomics.purdue.edu/families/4-3-2-1.htmlhttp://www.cazy.org/fam/GH9.html
GH16 (xyloglucan endotransglycosylases/hydrolases) (XTHs) http://labs.plantbio.cornell.edu/xth/genes.htm
GH17 http://cellwall.genomics.purdue.edu/families/4-3-2-2.htmlhttp://www.cazy.org/fam/GH17.html
GH18 (yieldins) http://cellwall.genomics.purdue.edu/families/4-1-2.htmlhttp://www.cazy.org/fam/GH18.html
GH28 (polygalacturonases) http://cellwall.genomics.purdue.edu/families/4-3-3.htmlhttp://www.cazy.org/fam/GH28.html
GH35 (beta-galactosidases) http://cellwall.genomics.purdue.edu/families/4-3-1-1.htmlhttp://www.cazy.org/fam/GH35.html
CE8 (pectin methylesterases) http://cellwall.genomics.purdue.edu/families/4-5-1.htmlhttp://www.cazy.org/fam/CE8.html
CE13 (pectin acylesterases) http://cellwall.genomics.purdue.edu/families/4-5-2.htmlhttp://www.cazy.org/fam/CE13.html
PL1 (pectate lyases) http://cellwall.genomics.purdue.edu/families/4-4-1.htmlhttp://www.cazy.org/fam/PL1.html
PL4 (rhamnogalacturonan lyases) http://cellwall.genomics.purdue.edu/families/4-4-2.htmlhttp://www.cazy.org/fam/PL4.html
Expansins http://www.bio.psu.edu/expansins/index.htm
arabinogalactan proteins (AGPs) Schultz et al.32 Johnson et al.14 Van Hengel and Roberts33 Liu and Mehdy34
fasciclin AGPs (FLAs) Schultz et al.32
GPI-anchored peptide (GAPEP) family http://cellwall.genomics.purdue.edu/families/6-4-10.html
COBRA-like proteins Roudier et al.35
leucine-rich repeat extensins (LRXs) Baumberger et al.13
Hyp/Pro-rich proteins (H/PRP) Fowler et al.36
Extensins Johnson et al.14
lignin toolbox Raes et al.37
peroxidases http://peroxibase.isb-sib.ch/index.php
laccases Pourcel et al.38 McCaig et al.39
SKU-like proteins (multi-copper oxidases) Jacobs and Roe40
phytocyanins Nersissian and Shipp15
subtilases http://csbdb.mpimp-golm.mpg.de/csbdb/dbcawp/psdb/pub/sgenes.html
peptidases http://merops.sanger.ac.uk/
peptidase inhibitors http://merops.sanger.ac.uk/
receptor-like kinases Shiu and Bleecker41