Table 1. Polymorphism Counts for Each Fragment For each count in bold, the number of sites represents the number of SNPs plus the number of indels treated as single SNPs. Numbers in parentheses represent the number of sites with a Minor Allele Frequency (MAF) 
5% and 
10%, respectively.
| Fragment | Total 
|
Indels | A. formosa | A. pubescens | Shared | Fixed Differences |
| Exclusive | Exclusive | |||||
| Acetyl | 5 (2, 2) | 0 | 1 (0, 0) | 2 (0, 0) | 2 (2, 2) | 0 |
| DEFEN | 20 (8, 6) | 3 | 9 (1,0) | 4 (0, 0) | 7 (7, 6) | 0 |
| Gapc | 44 (14, 8) | 14 | 18 (1,0) | 11 (0,0) | 15 (13, 8) | 0 |
| H3 | 18 (7, 2) | 2 | 5 (0, 0) | 5 (1, 0) | 8 (6, 2) | 0 |
| Heat | 20 (7, 4) | 1 | 7 (0, 0) | 9 (4, 1) | 4 (3, 3) | 0 |
| AP3 | 29 (16, 12) | 10 | 10 (4, 3) | 11 (4, 2) | 8 (8, 7) | 0 |
| LFY | 12 (4, 2) | 4 | 6 (2, 0) | 3 (0, 0) | 3 (2, 2) | 0 |
| Pist | 15 (8, 4) | 2 | 10 (4, 1) | 2 (1, 0) | 3 (3, 3) | 0 |
| UF3GT | 34 (19, 16) | 4 | 9 (2, 0) | 6 (0, 0) | 19 (17, 16) | 0 |