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. Author manuscript; available in PMC: 2011 Mar 1.
Published in final edited form as: Genes Chromosomes Cancer. 2010 Mar;49(3):224–236. doi: 10.1002/gcc.20731

Table 3.

Oligonucleotides Used in RACE and RT-PCR Studies

Gene Sequence Position of the Primer1
PAX3-32 GCTTTCAACCTCTCTTCCCG exon 6; 853-874 n
PAX3-34 CCAGCCCACATCTATTCCACAAG exon 7; 936-958 n
NCOA1-33 TAATACATCTAATCCACCCCCCTG exons 13-14; 2883-2906 n
NCOA1-35 GCCTTCTCATCATTTCTCCCTTCTACTG exon 13; 2764-2792 n
NCOA1-40; RACE CCATCCTGTCTGTCTCACATAAGCC exon 13; 2743-2767 n
PAX3-41 TGGAGCGTGCTTTTGAGAGAAC exon 5; 701-722 n
PAX3-43 TCCTTCCAACCCAGACAGCAG exon 7; 1032-1052 n
PAX3-45; RACE CTGCCTCCCCAGCACCAG exon 7; 1062-1079 n
PAX3-47; RACE GCTTTCAACCATCTCATTCCCG exon 6; 864-874 n
PAX3-42; RACE ATGGCAGTGGGAGGGAACC exon 7; 1244-1263 n
NCOA2-44 CGGTGCCCATTCTCCAGATG exon 13; 3011-3030 n
NCOA2-46; RACE GCAGTGCTGTTTTCTGGGCTC exon 12; 2732-2752 n
NCOA2-48 TCTCACAGCCGAACTCTGCG exon 13; 3029-3048 n
1

Position in the wild type PAX3 (NM_181457), NCOA1 (NM_003743) and NCOA2 (NM_006540) genes; n = nucleotide position.