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. Author manuscript; available in PMC: 2011 Mar 1.
Published in final edited form as: Genes Chromosomes Cancer. 2010 Mar;49(3):224–236. doi: 10.1002/gcc.20731

Table 4.

Oligonucleotides Used in the Construction of PAX3-NCOA1 and PAX3-NCOA2 Deletion Mutants

Gene Primer Sequence
PAX3-
NCOA1
type 1
AD1-PN1.1-357u GCTATAAATCAGAGTAAATCAGCTCTTGAACAGCTGGTATCC′
AD1-PN1.1-357l GGATACCAGCTGTTCAAGAGCTGATTTACTCTGATTTATAGC
AD1-PN1.1-417u GCTATAAATCAGAGTAAATCGGTGGATTAGATGTATTATCAGAG
AD1-PN1.1-417l CTCTGATAATACATCTAATCCACCGATTTACTCTGATTTATAGC
AD2-PN1.1-697-727u GTTCCCCAAGGTGAGGCCAACGCCTCCGGGTATCAGACATGA
AD2-PN1.1-697-727l TCATGTCTGATACCCGGAGGCGTTGGCCTCACCTTGGGGAAC
PAX3-
NCOA1
type 2
AD1-PN1.2-495u GAAGACCAGTGTATTAGCGAGAAGGCTTCTTCTTGA
AD1-PN1.2-495l TCAAGAAGAAGCCTTCTCGCTAATACACTGGTCTTC
AD1-PN1.2-549u GAAGACCAGTGTATTAGCGGTGGATTAGATGTATTAATCAG
AD1-PN1.2-549l CTGATTAATACATCTAATCCACCGCTAATACACTGGTCTTC
AD2-PN1.2-835-865u GGTGAGGCCAACTTTGCTCCATCTCTAGACATGAAGGCCTGGCAGCAA
AD2-PN1.2-835-865l TTGCTGCCAGGCCTTCATGTCTAGAGATGGAGCAAAGTTGGCCTCACC
PAX3-
NCOA2
AD1-PN2-649u GCCAGCCAAAACAGGCAGCCAGACCAGGTGTATCTGGCCTTGCGG
AD1-PN2-649l CCGCAAGGCCAGATACACCTGGTCTGGCTGCCTGTTTTGGCTGGC
AD1-PN2-739u GCCAGCCAAAACAGGCAGCCAGACCAGGTAGCTATTCGCCCATGCAAGATCCA
AD1-PN2-739l TGGATCTTGCATGGGCGAATAGCTACCTGGTCTGGCTGCCTGTTTTGGCTGGC
AD2- PN2-898-93u CAGCAGTTTCCATTTCCTCCAAACTACCCAACAGTCTCAGGCCAACCCAGCC
AD2- PN2-898-931 GGCTGGGTTGGCCTGAGACTGTTGGGTAGTTTGGAGGAAATGGAAACTGCTG

u= upper strand primer; l=lower strand primer