Table 1.
Species and sources for raw miRNA data
| Species | Number of miRNAs |
References | ||
|---|---|---|---|---|
| Total | Experimental | Computational | ||
| Aegilops speltoides | 1 | 1 | (12,13) | |
| Aegilops tauschii | 2 | 2 | (19) | |
| Alliaria petiolata | 1 | 1 | (19) | |
| Allium cepa | 7 | 7 | (12,13) | |
| Annona cherimola | 1 | 1 | (19) | |
| Antirrhinum majus | 1 | 1 | (19) | |
| Arabidopsis arenosa | 1 | 1 | (19) | |
| Arabidopsis cebennensis | 1 | 1 | (19) | |
| Arabidopsis halleri | 1 | 1 | (19) | |
| Arabidopsis thaliana | 1427 | 207 | 1220 | (2,4,8,9,11–13,16,41–58) |
| Arabis hirsuta | 1 | 1 | (19) | |
| Arachis hypogaea | 1 | 1 | (59) | |
| Australopyrum velutinum | 1 | 1 | (19) | |
| Avena sativa | 1 | 1 | (19) | |
| Barbarea vulgaris | 1 | 1 | (19) | |
| Boechera stricta | 1 | 1 | (14) | |
| Brachypodium distachyon | 12 | 12 | (25) | |
| Brachypodium sylvaticum | 1 | 1 | (19) | |
| Brassica napus | 45 | 45 | (50,60,61) | |
| Brassica oleracea | 9 | 1 | 8 | (14,50,62) |
| Brassica rapa | 20 | 20 | (14,50,62) | |
| Camelina microcarpa | 1 | 1 | (19) | |
| Capsella rubella | 1 | 1 | (19) | |
| Capsicum annuum | 3 | 3 | (12,13) | |
| Carica papaya | 2 | 1 | 1 | (14,63) |
| Chlamydomonas reinhardtii | 84 | 84 | (64,65) | |
| Citrus clementina | 1 | 1 | (14) | |
| Citrus sinensis | 5 | 5 | (12,13) | |
| Citrus × paradisi × Poncirus trifoliata | 4 | 4 | (14) | |
| Conringia orientalis | 1 | 1 | (19) | |
| Corylus avellana | 1 | 1 | (19) | |
| Cycas rumphii | 1 | 1 | (12,13) | |
| Descurainia sophia | 1 | 1 | (19) | |
| Dictyostelium discoideum | 2 | 2 | (66) | |
| Erysimum cheiri | 1 | 1 | (19) | |
| Eschscholzia californica | 1 | 1 | (12,13) | |
| Festuca arundinacea | 1 | 1 | (14) | |
| Festuca glaucescens × Lolium multiflorum | 1 | 1 | (19) | |
| Fourraea alpina | 1 | 1 | (19) | |
| Glycine clandestina | 3 | 3 | (12,13,22,23) | |
| Glycine max | 166 | 80 | 86 | (12,13,20–23,59) |
| Glycine soja | 3 | 3 | (22,23) | |
| Gossypium arboreum | 2 | 2 | (12,13) | |
| Gossypium herbaceum | 4 | 4 | (32) | |
| Gossypium hirsutum | 53 | 53 | (30–32) | |
| Gossypium raimondii | 11 | 11 | (12,13,30,32) | |
| Hedyotis centranthoides | 3 | 3 | (12,13) | |
| Hedyotis terminalis | 1 | 1 | (12,13) | |
| Helianthus annuus | 3 | 3 | (12,13) | |
| Henrardia persica | 1 | 1 | (19) | |
| Heteranthelium piliferum | 1 | 1 | (19) | |
| Hordeum vulgare | 1 | 1 | (14) | |
| Hordeum vulgare subsp. Spontaneum | 1 | 1 | (12,13) | |
| Hordeum vulgare subsp. Vulgare | 16 | 16 | (12,13) | |
| Ipomoea batatas | 1 | 1 | (12,13) | |
| Ipomoea nil | 5 | 5 | (12,13) | |
| Lactuca sativa | 3 | 3 | (12,13) | |
| Liriodendron tulipifera | 2 | 2 | (12,13) | |
| Lotus japonicus | 8 | 8 | (12,13,22,59) | |
| Lupinus luteus | 1 | 1 | (12,13) | |
| Malcolmia maritima | 1 | 1 | (19) | |
| Malus x domestica | 3 | 3 | (12,13) | |
| Manihot esculenta | 1 | 1 | (14) | |
| Medicago truncatula | 76 | 36 | 40 | (13,20,22,59,67–69) |
| Nasturtium officinale | 1 | 1 | (19) | |
| Nicotiana benthamiana | 4 | 4 | (12,13) | |
| Nicotiana sylvestris | 1 | 1 | (19) | |
| Nicotiana tabacum | 1 | 1 | (12,13) | |
| Nuphar advena | 3 | 3 | (12,13) | |
| Oenocarpus bataua | 1 | 1 | (19) | |
| Oryza barthii | 1 | 1 | (19) | |
| Oryza brachyantha | 1 | 1 | (19) | |
| Oryza nivara | 1 | 1 | (19) | |
| Oryza rufipogon | 6 | 6 | (19) | |
| Oryza sativa | 2540 | 269 | 2271 | (2,3,6–8,10–13,28,52–55,69–78) |
| Panicum virgatum | 1 | 1 | (14) | |
| Pennisetum ciliare | 1 | 1 | (14) | |
| Pennisetum glaucum | 1 | 1 | (12,13) | |
| Peridictyon sanctum | 1 | 1 | (19) | |
| Persea americana | 1 | 1 | (12,13) | |
| Petunia x hybrida | 1 | 1 | (19) | |
| Phaseolus coccineus | 2 | 2 | (12,13) | |
| Phaseolus vulgaris | 2 | 2 | (14,59) | |
| Phleum pratense | 1 | 1 | (19) | |
| Physcomitrella patens | 282 | 281 | 1 | (2,12,13,70,79–82) |
| Picea glauca | 5 | 5 | (12,13) | |
| Picea sitchensis | 3 | 3 | (12,13) | |
| Pinus taeda | 40 | 24 | 16 | (6,7,12,13,77) |
| Populus tremula | 4 | 4 | (12,13) | |
| Populus tremula × Populus tremuloides | 6 | 6 | (14) | |
| Populus tremuloides | 7 | 7 | (12,13) | |
| Populus trichocarpa | 2780 | 77 | 2703 | (2,6,11,13,83,84) |
| Populus trichocarpa × Populus deltoides | 5 | 5 | (12–14) | |
| Prunus armeniaca | 2 | 2 | (12,13) | |
| Prunus persica | 3 | 3 | (14) | |
| Prunus salicina | 1 | 1 | (19) | |
| Ricinus communis | 24 | 24 | (19) | |
| Rorippa indica | 1 | 1 | (19) | |
| Saccharum officinarum | 32 | 32 | (14,20) | |
| Saccharum sp | 2 | 2 | (12,13) | |
| Schedonorus arundinaceus | 1 | 1 | (12,13) | |
| Secale cereale | 1 | 1 | (12,13) | |
| Selaginella moellendorffii | 64 | 64 | (79) | |
| Sesamum indicum | 2 | 2 | (12,13) | |
| Sibara virginica | 1 | 1 | (19) | |
| Solanum demissum | 1 | 1 | (19) | |
| Solanum lycopersicum | 37 | 21 | 16 | (12–14,34,85) |
| Solanum tuberosum | 14 | 14 | (12–14) | |
| Sorghum bicolor | 76 | 76 | (12–14,20,27,86) | |
| Sorghum propinquum | 2 | 2 | (12,13) | |
| Theobroma cacao | 1 | 1 | (12,13) | |
| Thlaspi arvense | 1 | 1 | (19) | |
| Trifolium repens | 1 | 1 | (19) | |
| Triticum aestivum | 85 | 71 | 14 | (12,13,24,25) |
| Triticum monococcum | 2 | 2 | (19) | |
| Triticum turgidum | 2 | 2 | (12,13) | |
| Triticum urartu | 2 | 2 | (19) | |
| Vigna unguiculata | 2 | 2 | (22,59) | |
| Vitis vinifera | 142 | 142 | (13,22,87) | |
| Zea mays | 207 | 2 | 205 | (12,13,20,26–29) |
| Zinnia elegans | 3 | 3 | (12,13) | |
The curation of miRNAs that are not included in miRBase or that have not yet been named was performed using a special format that includes information about the corresponding author. An example is osa-miRf10000-akr, a rice miRNA discovered by Anders Krogh’s group (11).