Table 1.
Species analysed and number of families and classified proteins per species
| Groups | Species | Source | Annotation version | Reference | Total number of proteinsa | Genome size (Mbp) | Number of families | Number of classified proteinsa |
|---|---|---|---|---|---|---|---|---|
| Red algae (Rhodophytes) | Cyanidioschyzon merolae | 1 | 20070710 | (8) | 5008 | 16.52 | 34 | 147 |
| Galdieria sulphuraria | 9 | (9) | 6604 | 10 | 37 | 201 | ||
| Green algae (Prasinophytes) | Micromonas pusilla CCMP1545 | 2 | 2 | (10) | 10 455 | 15 | 49 | 289 |
| Micromonas sp. RCC299 | 2 | 3 | (10) | 10 160 | 15 | 49 | 326 | |
| Ostreococcus tauri | 2 | 2 | (11) | 7812 | 12.56 | 47 | 216 | |
| Ostreococcus lucimarinus | 2 | 2 | (11) | 7651 | 13.204 | 46 | 236 | |
| Green algae (Chlorophytes) | Chlamydomonas reinhardtii | 2 | 4 | (12) | 16 460 | 121 | 52 | 346 |
| Chlorella sp. NC64A | 2 | 1 | 9762 | 40 | 48 | 304 | ||
| Coccomyxa sp. C-169 | 2 | 1 | 10 174 | 120 | 47 | 261 | ||
| Bryophyte (Bryopsida) | Physcomitrella patens | 2 | 1.1 | (13) | 35 724 | 480 | 72 | 1295 |
| Spike-moss (Lycopodiophyte) | Selaginella moellendorffii | 2 | 1 | 22 138 | 100 | 74 | 896 | |
| Angiosperms (Monocots) | Oryza sativa subsp. indica | 3 | 20050118 | (14) | 49 643 | 420 | 79 | 2393 |
| Oryza sativa subsp. japonica | 4 | 6 | (15) | 63 306 | 420 | 79 | 2722 | |
| Sorghum bicolor | 2 | 4 | (16) | 35 682 | 730 | 78 | 2231 | |
| Zea mays | 5 | 3b.50 | 55 810 | 2400 | 79 | 3608 | ||
| Angiosperms (Eudicots) | Carica papaya | 7 | (17) | 24 852 | 372 | 81 | 1480 | |
| Arabidopsis lyrata | 2 | 1 | 32 234 | 206.7 | 81 | 2162 | ||
| Arabidopsis thaliana | 6 | 8 | (18) | 30 707 | 125 | 81 | 2451 | |
| Populus trichocarpa | 2 | 1.1 | (19) | 45 009 | 485 | 81 | 2901 | |
| Vitis vinifera | 8 | 1 | (20) | 30 342 | 500 | 80 | 1725 |
(1) CME GP, Cyanidioschyzon merolae Genome Project, http://merolae.biol.s.u-tokyo.ac.jp/; (2) JGI/DOE, Joint Genome Institute/Department of Energy, http://www.jgi.doe.gov/; (3) BGI, Beijing Genomics Institute, http://www.genomics.org.cn/; (4) TIGR, The Institute for Genomic Research, http://www.tigr.org/; (5) MaizeSequence.org, http://www.maizesequence.org; (6) TAIR, The Arabidopsis Information Resource, http://www.arabidopsis.org/; (7) The Hawaii Papaya Genome Project, http://asgpb.mhpcc.hawaii.edu/papaya/; (8) Genoscope, Centre Nacional de Séquençage http://www.genoscope.cns.fr/spip/Vitis-vinifera-e.html; (9) Data communicated by Prof. Dr Andreas Weber, University of Duesseldorf, Germany.
aNumber of non-redundant proteins.