Table 1.
Genome sequence (Tcas_3.0) statistics
| Chromosome | Lengtha (bases) | Number of contigs (bases) | Number of captured gaps (bases) | Number of uncaptured gapsb (bases) |
|---|---|---|---|---|
| ChLGX | 10 877 635 | 338 (7 017 036) | 299 (265 951) | 12 (3 600 000) |
| ChLG2 | 20 218 415 | 393 (14 025 453) | 338 (505 072) | 19 (5 700 000) |
| ChLG3 | 38 791 480 | 1560 (27 070 658) | 1355 (1 568 829) | 34 (10 200 000) |
| ChLG4 | 13 894 384 | 331 (11 543 342) | 299 (554 338) | 6 (1 800 000) |
| ChLG5 | 19 135 781 | 388 (13 841 583) | 335 (502 879) | 16 (4 800 000) |
| ChLG6 | 13 176 827 | 667 (8 259 034) | 549 (747 290) | 14 (4 200 000) |
| ChLG7 | 20 532 854 | 445 (14 850 616) | 401 (591 423) | 17 (5 100 000) |
| ChLG8 | 18 021 898 | 676 (12 793 837) | 570 (761 081) | 15 (4 500 000) |
| ChLG9 | 21 459 655 | 695 (14 607 456) | 598 (892 186) | 20 (6 000 000) |
| ChLG10 | 11 386 040 | 585 (7 061 652) | 495 (442 098) | 13 (3 900 000) |
| Unknownc | 41 251 169 | 3616 (20 543 639) | 1254 (2 031 250) | 1848 (18 480 000) |
aChromosome builds include scaffolds and contigs as well as uncaptured gaps between them. In GBrowse, scaffolds are not shown explicitly, but can be deduced from the contigs and captured gaps between uncaptured gaps. Since some contigs overlap, the total length of each chromosome build (column 2) is somewhat smaller than the combined total of columns 3, 4 and 5.
bThe uncaptured gaps on chromosome builds X – 10 are blocks of 300 000 Ns that act as placeholders between the mapped scaffolds and contigs. The actually size of the uncaptured gaps is not known and may be considerably longer or shorter than 300 kb.
cUnknown is a linear compilation of scaffolds and contigs that have not been mapped to chromosomes.