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. 2009 Nov 5;38(Database issue):D800–D805. doi: 10.1093/nar/gkp935

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© The Author(s) 2009. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 3. — The maximum likelihood tree (ML) of malate dehydrogenase (Mdh) protein family, taking the peroxisomal Mdh from Arabidopsis thaliana as a seed. Different species names are given in different colours. Phylogenetic trees are available in newick standard format and associated with taxonomic data via phyloXML, an XML language for the analysis, exchange, and storage of phylogenetic trees and associated data. The Archaeopteryx applet software was used for the visualisation of phylogenetic trees (37).