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. 2009 Nov 5;38(Database issue):D196–D203. doi: 10.1093/nar/gkp931

Figure 1.

Figure 1.

A diagram showing the use of XML in the InParanoid workflow. The InParanoid convert program starts with simple FASTA files that each have a different header line format. With the help of the species.xml file, it parses and converts them to SeqXML files, which can be easily processed and validated as input to the InParanoid algorithm. On the web site, the user can choose between different data formats; currently supported are SQL, TXT, HTML and OrthoXML.