Table 1.
Consistency for proteomes found in both InParanoid 6 and 7
| Species | Identical | Sequences v7/ | Identical | Average |
|---|---|---|---|---|
| sequences | Sequences v6 | IDs | identity | |
| Apis mellifera | 0.06 | 0.68 | – | 0.63 |
| Takifugu rubripes | 0.09 | 0.84 | – | 0.83 |
| Tetraodon nigroviridis | 0.09 | 0.70 | – | 0.80 |
| Danio rerio | 0.29 | 1.69 | – | 0.94 |
| Anopheles gambiae | 0.33 | 0.94 | – | 0.82 |
| Caenorhabditis remanei | 0.34 | 1.23 | – | 0.90 |
| Drosophila pseudoobscura | 0.34 | 1.62 | – | 0.95 |
| Bos taurus | 0.38 | 0.94 | 0.74 | 0.92 |
| Cryotococcus neoformans | 0.48 | 1.01 | – | 0.96 |
| Caenorhabditis briggsae | 0.48 | 1.13 | 0.48 | 0.94 |
| Mus musculus | 0.49 | 1.00 | – | 0.92 |
| Oryza sativa | 0.63 | 0.75 | – | |
| Entamoeba histolytica | 0.66 | 0.87 | 0.84 | |
| Pan troglodytes | 0.73 | 0.95 | 0.86 | |
| Homo sapiens | 0.75 | 0.94 | 0.75 | |
| Debaryomyces hansenii | 0.82 | 0.99 | – | |
| Drosophila melanogaster | 0.87 | 1.02 | 0.83 | |
| Caenorhibditis elegans | 0.90 | 1.00 | – | |
| Yarrowia lipolytica | 0.90 | 0.99 | – | |
| Canis familiaris | 0.92 | 1.00 | 1.00 | |
| Arabidopsis thaliana | 0.93 | 0.98 | – | |
| Monodelphis domestica | 0.94 | 0.99 | 0.99 | |
| Escherichia coli K12 | 0.96 | 0.98 | – | |
| Kluyveromyces lactis | 0.97 | 0.95 | – | |
| Gasterosteus aculeatus | 0.97 | 1.00 | 1.00 | |
| Candida glabrata | 0.97 | 1.00 | – | |
| Dictyostelium discoideum | 0.97 | 0.99 | 0.89 | |
| Schizosaccharomyces pombe | 0.97 | 1.00 | – | |
| Gallus gallus | 0.98 | 1.00 | 0.99 | |
| Xenopus tropicalis | 0.98 | 0.98 | 1.00 | |
| Ciona intestinalis | 0.99 | 0.99 | 1.00 | |
| Saccharomyces cerevisiae | 1.00 | 1.01 | 1.00 | |
| Rattus norvegicus | 1.00 | 0.97 | 1.00 | |
| Aedes aegypti | 1.00 | 1.00 | 1.00 |
The ‘Identical sequences’ and ‘Identical IDs’ columns show the sequence checksums and gene identifiers common to both versions as a fraction of the version with the lowest number of sequences. Most species have a high fraction of identical sequences; for those <50% the average identity using BLAST (see text) between release 6 and 7 is shown. Of those, only A. mellifera has a low average identity. Thus, although in some species a large fraction of the proteins has been modified, the modifications are generally minor. ‘—’, not applicable due to different identifier systems in the two versions