Table 5.

Risk effects estimated by OR (95%CI) for the association between extended and reduced haplotypes across IL3 and CSF2 and risk of scarring trachoma and trichiasis.

HAP	SNPa								CLR
									Scarring trachoma			Trichiasis
	1A	2A	3A	4A	5A	6A	7A	8A	OR	95%CI	p value	OR	95%CI	p value
H1	T	C	C	G	T	C	G	C	1.370	1.070,1.763	0.010	1.390	1.040,1.869	0.030
H2	-	-	-	-	T	C	G	-	1.032	0.830,1.280	0.778	1.131	0.822,1.556	0.448
L1	T	C	C	G	A	T	A	C	0.804	0.520,1.220	0.324	0.871	0.520,1.378	0.609
L2	-	-	-	-	A	T	A	-	0.820	0.650,1.043	0.084	0.610	0.423,0.880	0.008

^a Refer to table 4 for SNP information