Table 1.
Summary of the number of nonredundant proteins that were identified from four plant pathogens
| Target plant pathogen | Database | Database records for target plant pathogen | Total NR proteins (99.9% confidence) | NR proteins matching target pathogen | NR proteins matching another species of target pathogen | NR proteins matching nontarget species | # Matching several species (ambiguous for target pathogen identification) |
|---|---|---|---|---|---|---|---|
| U. maydis | NCBInr | 6664 (6662 RefSeq) | 434 | 417 | 0 | 10 | 7 |
| P. sojae | NCBInr | 133 | 79 | 4 | 36 | 23 | 16 |
| P. sojae | NCBInr + JGI | 19 160 | 457 | 433 | 8 | 4 | 12 |
| P. sojae proteins | |||||||
| P. sojae | NCBInr + JGI | 19 160 | 471 | 369 | 28 | 4 | 70 |
| P. sojae + 15 743 JGI | |||||||
| P. ramorum proteins | |||||||
| F. graminearum | NCBInr | 11 830 (11 638 PH-1 RefSeq) | 26 | 23 | 0 | 0 | 3 |
| F. graminearum | NCBInr + MIPS | 25 851 | 27 | 24 | 0 | 0 | 3 |
| F. graminearum | |||||||
| PH-1 proteins | |||||||
| R. solani | NCBInr | 37 | 13 | 1 | 0 | 7 | 5 |