Table 5.
Challenge | Best submitted | Our method | No self-regulations |
---|---|---|---|
DIRECTED-SIGNED-EXCITATORY | AUC = 0.79 | AUC = 0.61 | AUC = 0.79 |
AUCPR = 0.72 | AUCPR = 0.25 | AUCPR = 0.54 | |
DIRECTED-SIGNED-INHIBITORY | AUC = 0.63 | AUC = 0.96 | AUC = 0.96 |
AUCPR = 0.14 | AUCPR = 0.45 | AUCPR = 0.45 | |
DIRECTED-UNSIGNED | AUC = 0.73 | AUC = 0.56 | AUC = 0.79 |
AUCPR = 0.55 | AUCPR = 0.30 | AUCPR = 0.57 |
Results of the DREAM 2 challenge #3 data of our method (second column) compared to submitted best results from [53] (first column). The third column gives the AUC values for our method when self-regulations are omitted. Our method clearly outperforms all submitted methods in the DIRECTED-SIGNED-INHIBITORY challenge; furthermore, when neglecting self-regulations, we also beat the best submitted method in the DIRECTED-UNSIGNED challenge.