Table 3.
Tagged risk haplotypes at Xq27 -Training and test subjects
| Location | htSNP | Allele | Training | Test | ||||
|---|---|---|---|---|---|---|---|---|
| Cases | Controls | P | Cases | Controls | P | |||
|
Haplotype 1 (hRPL44) |
rs5907823 | C | 95 (38.6) |
71 (28.9) |
0.023 | 73 (39.3) |
79 (42.5) |
0.536 |
| rs7880499 | G | |||||||
| rs1016824 | T | |||||||
| rs12156848 | G | |||||||
| rs7885649 | A | |||||||
| Haplotype 2 (RBMX2P1) |
rs845150 | A | 19 (6.6) |
9 (3.1) |
0.062 | |||
| Haplotype 3 (ChrX: 140190766- 140213636) |
rs861508 | C | 18 (6.8) |
7 (2.6) |
0.020 | 13 (6.6) |
5 (2.5) |
0.040 |
| rs845165 | A | |||||||
| rs845190 | T | |||||||
| rs845187 | C | |||||||
| rs845186 | A | |||||||
| rs1493189 | A | |||||||
| Haplotype 4 (ChrX: 140266943- 140295222) |
rs844963 rs844956 |
A C |
22 (7.7) |
14 (4.9) |
0.168 | |||
Numbers of subjects and tagged haplotype frequencies (%) are indicated.