Table 2.
Comparison of cross-validated predictive accuracy on CB513 dataset with other secondary structure methods.
| Method | Q3 (%) | QH (%) | QE (%) | QC (%) | CH | CE | CC |
|---|---|---|---|---|---|---|---|
| DISSPred | 80.0 ± 0.5 | 83.3 | 69.0 | 83.1 | 0.77 | 0.68 | 0.62 |
| PSIPRED | 78.2 | N/A | N/A | N/A | N/A | N/A | N/A |
| PHD | 74.7 | N/A | N/A | N/A | N/A | N/A | N/A |
| DESTRUCT | 79.4 | N/A | N/A | N/A | N/A | N/A | N/A |
| YASSPP | 77.8 | N/A | N/A | N/A | 0.71 | 0.64 | 0.58 |
| PMSVM | 75.2 | 80.4 | 71.5 | 72.8 | 0.71 | 0.61 | 0.61 |
| SVMfreq | 73.5 | 75.0 | 60.0 | 79.0 | 0.65 | 0.53 | 0.54 |
| SVMpsi | 76.6 | 78.1 | 65.6 | 81.1 | 0.68 | 0.60 | 0.56 |
The results for PSIPRED, PHD and DESTRUCT were obtained from reference [8].