TABLE 2.
Genome organization of newly discovered cycloviruses and representative circoviruses
| Virus type and circular DNA virus species | No. of nt in the genome | No. of aa in protein |
Length (nt) of region (start-end)a |
||
|---|---|---|---|---|---|
| Rep | Cap | 5′ Intergenic region | 3′ Intergenic region | ||
| Cycloviruses | |||||
| PK5006 | 1,723 | 278 | 219 | 230 (1516-22) | |
| PK5222 | 1,740 | 279 | 218 | 247 (1516-22) | |
| PK5510 | 1,759 | 280 | 219 | 271 (1679-190) | |
| PK5034 | 1,780 | 277 | 218 | 293 (1691-203) | |
| PK6197 | 1,741 | 279 | 218 | 248 (1516-22) | |
| Chimp11 | 1,750 | 280 | 220 | 258 (1515-22) | |
| Chimp12 | 1,747 | 280 | 220 | 255 (1515-22) | |
| NG12 | 1,794 | 281 | 218 | 284 (1691-180) | 7 (1027-1033) |
| NG14 | 1,795 | 286 | 230 | 245 (1707-156) | |
| TN18 | 1,867 | 286 | 222 | 160 (1762-54) | 6 (1087-1092) |
| TN25 | 1,867 | 286 | 222 | 160 (1762-54) | 6 (1087-1092) |
| NG13 | 1,699 | 307 | 221 | 105 (1622-27) | 4 (952-955) |
| Circoviruses | |||||
| Chimp17 | 1,935 | 291 | 232 | 198 (1772-34) | 162 (911-1072) |
| MN614 | 1,767 | 314 | 233 | 83 (1735-50) | 37 (996-1032) |
| MN500 | 1,768 | 314 | 233 | 83 (1736-50) | 38 (996-1033) |
| PCV1 | 1,759 | 312 | 233 | 82 (1724-46) | 36 (986-1021) |
| PCV2 | 1,768 | 314 | 233 | 83 (1736-50) | 38 (996-1033) |
| DuCV | 1,991 | 292 | 257 | 110 (1929-47) | 228 (927-1154) |
| GoCV | 1,821 | 293 | 250 | 132 (1762-72) | 54 (955-1008) |
| CoCV | 2,037 | 317 | 273 | 90 (1988-40) | 171 (995-1165) |
| RaCV | 1,898 | 291 | 243 | 86 (1848-35) | 204 (912-1115) |
| SwCV | 1,785 | 293 | 251 | 107 (1726-47) | 40 (930-969) |
| BFDV | 1,993 | 299 | 244 | 126 (1975-107) | 232 (1008-1239) |
| GuCV | 2,035 | 305 | 245 | 207 (1928-99) | 172 (1018-1189) |
| FiCV | 1,962 | 291 | 249 | 29 (1962-28) | 307 (905-1211) |
| StCV | 2,063 | 289 | 276 | 79 (2021-36) | 283 (907-1189) |
| CaCV | 1,952 | 290 | 250 | 77 (1907-31) | 249 (905-1153) |
a
Fifteen genome sequences obtained in this study are shown in boldface type. Nucleotide position 1 was set at the residue A at position 8 of the nonamer sequence. nt, nucleotides; aa, amino acids.