Table 2. MAPK docking pattern hits on HIV proteins.

A(Da)					B(Db)
VP	A1	B	C	Total	VP	A1	B	C	Total
MA	6	14	50	34	MA	1	1	1	1
Nef	97	89	98	93	Nef	96	89	91	90
Rev	1	9	1	3	Rev	0	0	1	0
Tat	0	0	0	0	Tat	67	91	44	59
Vif	92	6	97	50	Vif	1	5	61	27

We searched sequences of HIV proteins using the four MAPK docking site patterns in Table 1. Here we present the percentages of HIV subtype sequences with these docking site patterns. The Da and Db patterns were found on the majority of Nef sequences, but they were missing from some subtypes of the other HIV proteins. The Dc pattern occurred on the majority of MA, Nef, Rev, and Vif subtypes. The Dd motif had hits on most sequences of all HIV proteins.