Skip to main content
. Author manuscript; available in PMC: 2011 Feb 1.
Published in final edited form as: Biochim Biophys Acta. 2009 Aug 6;1798(2):68–76. doi: 10.1016/j.bbamem.2009.07.022

Table 1.

Internal motion parameters for OmpA as analyzed by the extended model-free formalism a

Residue Internal model S2 Sf2 Ss2 τe (ps) τf (ps) τs (ns)
K3 N {S2, Sf2, τfs} 0.601 0.941 0.639 57.5 17.3
D4 {S2, τe} 0.909 775.1
N5 {S2, Sf2τs} 0.856 0.920 0.930 3.8
T6 β1 N/M
W7 {S2, Sf2τf, τs} 0.712 0.947 0.752 95.7 22.6
Y8 {S2, τe} 0.598 21325.0
T9 {S2, Sf2τf, τs} 0.660 0.971 0.680 246.5 19.2
G10 {S2, Sf2τf, τs} 0.681 0.900 0.757 29.2 6.5
A11 {S2, τe} 0.838 685.2
K12 {S2, Sf2τf, τs} 0.622 0.987 0.630 62.6 34.3
L13 {S2, Sf2τf, τs} 0.661 0.984 0.672 63.3 29.1
G14 {S2, τe} 0.883 1723.9
F15 {S2, Sf2τf, τs} 0.598 0.977 0.612 368.7 25.6
S16 {S2, Sf2τs} 0.601 0.837 0.718 1.8
Q17 L1 {S2, Sf2τf, τs} 0.557 0.929 0.600 580.8 8.8
Y18 {S2, Sf2τf, τs} 0.304 0.712 0.428 66.7 2.8
D20 {S2, Sf2τf, τs} 0.295 0.822 0.359 495.8 7.2
T21 {S2, Sf2τs} 0.304 0.825 0.369 1.3
G22 {S2, Sf2τf, τs} 0.182 0.611 0.297 120.6 3.9
I24 {S2, Sf2τs} 0.131 0.882 0.148 1.2
N25 {S2, Sf2τs} 0.113 0.843 0.134 1.1
N26 {S2, Sf2τf, τs} 0.151 0.662 0.229 79.6 2.1
E32 {S2, Sf2τf, τs} 0.336 0.781 0.431 125.9 5.4
N33 {S2, Sf2τf, τs} 0.366 0.741 0.495 60.3 5.5
Q34 β2 {S2, Sf2τf, τs} 0.623 0.902 0.691 68.1 9.1
G36 {S2, Sf2τf, τs} 0.577 0.965 0.598 115.8 25.6
A37 {S2, Sf2τf, τs} 0.501 0.962 0.521 236.7 23.3
G38 {S2, τe} 0.570 20775.2
A39 {S2, Sf2τf, τs} 0.764 0.970 0.788 281.6 11.5
F40 {S2, τe} 0.742 15597.0
G41 {S2, τe} 0.931 2722.1
G42 {S2, τe} 0.734 16825.6
Y43 {S2, τe} 0.724 20239.5
Q44 {S2, τe} 0.949 1235.2
V45 {S2, τe} 0.820 7718.2
N46 T1 {S2, τe} 0.675 386.5
Y48 {S2} 0.929
V49 β3 {S2, Sf2τf, τs} 0.527 0.944 0.558 167.8 20.0
G50 {S2, Sf2τf, τs} 0.781 0.982 0.795 64.7 28.0
F51 {S2, Sf2τf, τs} 0.820 0.971 0.845 82.8 10.3
E52 {S2, Sf2τf, τs} 0.831 0.981 0.848 143.3 21.1
M53 {S2, τe} 0.863 8755.5
G54 N/M
Y55 {S2, τe} 0.949 3771.5
Y63 L2 {S2, Sf2τf, τs} 0.433 0.804 0.539 121.6 3.9
K64 {S2, Sf2τf, τs} 0.413 0.797 0.519 232.2 6.3
G65 {S2, τe} 0.446 882.6
V67 {S2, Sf2τf, τs} 0.126 0.547 0.230 99.8 2.9
E68 {S2, Sf2τs} 0.195 0.816 0.240 1.1
N69 {S2, Sf2τs} 0.107 0.732 0.147 1.1
A71 {S2, Sf2τf, τs} 0.279 0.649 0.431 71.3 3.7
Y72 {S2, Sf2τf, τs} 0.666 0.836 0.797 366.4 2.0
V77 β4 {S2, τe} 0.927 774.3
Q78 {S2, τe} 0.935 1044.1
L79 {S2, Sf2τs} 0.572 0.992 0.576 23.5
T80 {S2, τe} 0.806 14921.2
A81 {S2, τe} 0.865 23784.9
K82 {S2, τe} 0.959 138.3
L83 {S2, τe} 0.865 1369.7
G84 {S2, τe} 0.954 180.6
Y85 {S2, τe} 0.956 871.1
I87 T2 {S2, Sf2τf, τs} 0.392 0.911 0.430 325.6 25.0
D89 {S2,Sf2 τs} 0.742 0.859 0.864 2.0
D90 {S2, Sf2τs} 0.863 0.951 0.908 0.8
L91 β5 {S2, Sf2τs} 0.681 0.869 0.783 5.3
D92 {S2, τe} 0.958 1515.8
I93 {S2, τe} 0.925 3146.7
Y94 {S2, τe} 0.986 738.3
T95 {S2, τe} 0.985 169.6
R96 N/M
L97 {S2, Sf2τs} 0.861 0.941 0.914 2.0
G99 {S2, τe} 0.967 1441.3
M100 {S2, τe} 0.977 745.3
V101 {S2, τe} 0.497 24680.7
F102 N/M
R103 N/M
V110 L3 {S2, Sf2τf, τs} 0.285 0.654 0.436 67.2 3.1
Y111 {S2, Sf2τf, τs} 0.297 0.783 0.380 54.6 1.6
G112 {S2, Sf2τf, τs} 0.185 0.609 0.303 77.2 2.7
K113 {S2, Sf2τf, τs} 0.186 0.635 0.293 39.7 1.6
N114 {S2, Sf2τf, τs} 0.153 0.577 0.264 67.7 2.1
T117 {S2, Sf2τs} 0.528 0.865 0.611 0.9
G118 β6 {S2, τe} 0.727 2343.5
V119 {S2, Sf2τf, τs} 0.653 0.823 0.794 60.3 3.6
G125 {S2, τe} 0.949 4126.3
G126 {S2, τe} 0.975 5644.8
V127 {S2, τe} 0.958 3531.9
E128 {S2, τe} 0.982 6837.4
Y129 {S2, Sf2τs} 0.740 0.863 0.857 1.9
A130 {S2, Sf2τf, τs} 0.856 0.950 0.901 268.7 10.1
I131 T3 {S2, Sf2τf, τs} 0.644 0.929 0.693 222.3 19.9
T132 {S2, τe} 0.905 2654.8
E134 {S2, τe} 0.941 158.9
I135 β7 {S2, Sf2τf, τs} 0.624 0.837 0.745 34.7 9.2
A136 {S2, Sf2τf, τs} 0.797 0.976 0.817 127.1 16.2
T137 {S2, τe} 0.891 1158.1
R138 {S2, τe} 0.916 2899.4
L139 {S2, Sf2τf, τs} 0.813 0.970 0.838 85.2 14.5
E140 {S2, τe} 0.967 2278.3
Y141 {S2, τe} 0.964 2109.0
Q142 {S2, τe} 0.978 3246.8
I147 L4 {S2, τe} 0.642 20.2
G148 {S2, Sf2τs} 0.325 0.959 0.339 1.5
D149 {S2, Sf2τf, τs} 0.297 0.807 0.368 92.5 1.5
A150 {S2, Sf2τs} 0.435 0.857 0.507 1.2
I153 {S2, Sf2τf, τs} 0.151 0.578 0.262 64.7 2.7
G154 {S2, Sf2τf, τs} 0.217 0.636 0.341 147.4 3.7
T155 {S2, Sf2τf, τs} 0.321 0.679 0.473 100.5 2.0
R156 {S2, Sf2τf, τs} 0.343 0.645 0.532 130.1 4.0
D158 {S2, Sf2τf, τs} 0.255 0.648 0.394 82.5 2.1
N159 {S2, τe} 0.832 84.8
L162 {S2, Sf2τf, τs} 0.684 0.841 0.814 62.3 4.6
S163 {S2, τe} 0.941 2922.1
L164 {S2, Sf2τf, τs} 0.810 0.973 0.833 134.4 15.0
G165 β8 {S2, Sf2τs} 0.878 0.933 0.940 1.3
V166 {S2, τe} 0.780 22728.5
S167 {S2, Sf2τf, τs} 0.767 0.962 0.798 178.7 14.8
Y168 {S2, Sf2τf, τs} 0.657 0.979 0.671 245.2 21.6
R169 {S2, τe} 0.940 51.4
F170 C {S2, Sf2τf, τs} 0.570 0.964 0.592 97.2 16.0
G171 {S2, Sf2τs} 0.859 0.924 0.930 1.1
Q172 {S2, Sf2τf, τs} 0.835 0.919 0.909 177.4 7.0
G173 {S2, Sf2τf, τs} 0.368 0.735 0.501 44.2 1.2
E174 {S2, Sf2τf, τs} 0.140 0.537 0.260 72.8 1.9
A175 {S2, Sf2τf, τs} 0.096 0.448 0.215 56.2 0.7
A176 {S2, Sf2τf, τs} 0.026 0.175 0.151 61.2 0.5
a

The analysis was performed using the program Relax[21, 22] without the parameter Rex. N/M, no model.