Table 3.
DosR data | GABP data | ||
Motif match for CSDeconv | Motif match for simplified CSDeconv | Motif match for CSDeconv | Motif match for simplified CSDeconv |
88,125.5 | 88,124.5 | 60,209,242 | |
434,926.5 | 434,925.5 | 60,209,279 | |
665,861.5 | 665,860.5 | 60,209,300 | 60,209,299 |
665,882.5 | 60,209,320 | 60,209,319 | |
668,497.5 | 668,498.5 | 60,209,356 | |
801,480.5 | 60,209,397 | ||
1,639,628 | 1,639,629 | 60,209,418 | 60,209,417 |
1,960,521 | 1,960,520 | 60,355,273 | 60,355,274 |
1,960,542 | 60,355,294 | ||
1,960,625 | 1,960,624 | 60,355,314 | |
1,965,472 | 1,965,473 | 60,355,334 | |
1,965,512 | 1,965,513 | 60,355,374 | 60,355,375 |
1,965,533 | 60,355,395 | ||
2,056,376 | 2,056,377 | 60,355,415 | |
2,056,410 | 60,355,435 | ||
2,238,919 | 60,483,321 | 60,483,320 | |
2,238,939 | 2,238,940 | 60,508,762 | |
2,256,475 | 60,508,861 | 60,508,862 | |
2,256,497 | 2,256,498 | 60,589,062 | 60,589,061 |
2,279,006 | 2,279,007 | 60,589,119 | |
2,279,027 | 60,589,144 | ||
2,279,063 | 2,279,062 | 60,589,163 | |
2,949,473 | 2,949,472 | 60,784,040 | |
2,949,496 | 60,784,108 | ||
2,953,075 | 2,953,074 | 60,784,168 | 60,784,167 |
2,953,099 | 60,784,201 | ||
2,954,793 | 60,802,658 | ||
2,955,032 | 2,955,033 | 60,802,702 | |
2,955,099 | 60,802,724 | 60,802,725 | |
2,955,477 | 60,802,741 | ||
3,492,093 | 3,492,094 | 60,802,761 | |
3,496,452 | 3,496,453 | 60,802,785 | |
3,500,832 | 60,802,817 | ||
3,500,854 | 3,500,853 | 60,808,690 | |
60,808,717 | |||
60,808,763 | |||
60,808,770 | |||
60,808,789 | |||
60,808,815 | |||
60,838,195 | 60,838,196 | ||
60,846,664 | |||
60,846,794 | |||
60,857,070 | |||
60,878,251 | 60,878,250 | ||
60,878,292 | |||
60,878,366 | |||
60,878,387 | 60,878,388 | ||
61,517,979 | |||
61,518,050 | 61,518,051 | ||
61,518,359 | |||
61,741,682 | |||
61,741,862 | |||
61,741,895 | |||
61,741,918 |
Locations of motif matches for CSDeconv and a simplified CSDeconv that uses motif finding instead of blind deconvolution are listed for both the DosR and GABP datasets. Offsets are observed in the matching sequences for the two methods owing to differing motifs found by the methods.