TABLE 1.
Characteristic | Description or value for strain |
||||
---|---|---|---|---|---|
“Ca. A. asiaticus” 5a2 | “Ca. Sulcia muelleri” GWSS | “Azobacteroides pseudotrichonymphae” CFP2 | Flavobacterium psychrophilum JIP02/86 | Bacteroides thetaiotaomicron VPI-5482 | |
Lifestyle | Obligate intracellular, parasitic | Obligate intracellular, mutualistic | Obligate intracellular, mutualistic | Facultative intracellular, parasitic | Extracellular, mutualistic or parasitic |
Chromosome size (bp; excluding plasmids) | 1,884,364 | 245,530 | 1,114,206 | 2,861,988 | 6,260,361 |
G+C content (%) | 35.0 | 22.4 | 33.0 | 32.5 | 42.8 |
No. of protein-coding genes | 1557 | 228 | 758 | 2432 | 4779 |
Avg length of protein-coding genes (bp) | 990 | 1006 | 1047 | 1003 | 1170 |
No. of rRNA operons | 1a | 1 | 1a | 6 | 5 |
No. of tRNA genes | 35 | 31 | 38 | 49 | 71 |
Coding density (%) | 81.8 | 96.1 | 71.2 | 84.5 | 89.3 |
No. of putative pseudogenes | 222 | - | 22 | 20 | - |
No. of mobile genetic elements | 381 | - | NDb | 74 | 67 |
% of mobile genetic elements | 24% | - | ND | 3% | 1% |
Reference(s) | This study | 74, 127 | 45 | 27 | 129 |
16S and 23S/5S rRNA genes are unlinked.
ND, not determined.