TABLE 2.
Domain organization of CabC (Sde_3323) and CabD (Sde_0798) proteins
| Protein and domain prediction site (accession no.)a | Amino acid position | Predicted domain |
|---|---|---|
| CabC | ||
| PS50268 | 346-482 | CADHERIN_2 |
| 2077-2179 | ||
| 2289-2373 | ||
| PF00801 | 2946-3004 | PKD |
| SM00089 | 2920-3007 | |
| PF03160 | 2839-2870 | Calx-beta |
| SM00736 | 2565-2658 | CADG |
| 2911-3011 | ||
| PF04509 | 1463-1486 | CheC |
| 1567-1582 | ||
| 1663-1678 | ||
| 1855-1870 | ||
| PF05345 | 2597-2640 | He_PIG |
| G3DSA:2.40. 160.20 | 3308-3467 | OMP-b-brl |
| SSF49313 | 2563-2657 | Cadherin |
| CabD | ||
| PS50268 | 1208-1305 | CADHERIN_2 |
| 1977-2061 | ||
| SM00112 | 936-1015 | CA |
| 1509-1583 | ||
| 1695-1769 | ||
| SM00736 | 1305-1396 | CADG |
| 1397-1489 | ||
| 1490-1582 | ||
| 1583-1675 | ||
| 1676-1768 | ||
| 2251-2343 | ||
| 2345-2436 | ||
| 2534-2620 | ||
| PF05345 | 1320-1379 | He_PIG |
| 1521-1564 | ||
| 1707-1750 | ||
| 2282-2313 | ||
| 2375-2418 | ||
| TIGR01965 | 693-794 | VCBS repeat |
| 1320-1411 | ||
| 1786-1879 | ||
| 2077-2169 | ||
| 2171-2266 | ||
| G3DSA:2.40.160.20 | 3279-3469 | OMP-b-brl |
| PF01839 | 3016-3054 | FG-GAP |
| SSF49313 | 1301-1393 | Cadherin |
| 1394-1486 | ||
| 1487-1579 | ||
| 1580-1672 | ||
| 1673-1767 | ||
| 2249-2340 | ||
| 2341-2435 | ||
| G3DSA:2.130.10.130 | 2965-3097 |
a
The domains of CabC and CabD were predicted by several protein databases including SMART, Pham, InterPro, and PROSITE.