Table 3. Selected 9p21 SNPs associated with PMI based logistic regression model.
Minor Allele Frequency |
Covariate-adjusted additive genetic model* |
|||||||
---|---|---|---|---|---|---|---|---|
SNP | Chr 9 position | Allele (Minor/Major) | Cases | Controls | Odds Ratio (95% CI) | Asymptotic P-value † | FWER permuted P-value ‡ | Prior non-surgical MI studies |
rs10116277 | 22,071,397 | G/T | 0.53 | 0.40 | 1.79 (1.29 - 2.51) | 0.001 | 0.019 | (7) |
rs6475606 | 22,071,850 | C/T | 0.53 | 0.40 | 1.79 (1.28 - 2.50) | 0.001 | 0.020 | |
rs1333040 | 22,073,404 | C/T | 0.46 | 0.33 | 1.66 (1.20, 2.28) | 0.002 | 0.054 | (7) |
rs2383206 | 22,105,026 | A/G | 0.50 | 0.38 | 1.67 (1.20, 2.32) | 0.002 | 0.061 | (2) |
rs2383207 | 22,105,959 | A/G | 0.50 | 0.37 | 1.71 (1.23 - 2.38) | 0.001 | 0.040 | (7) |
rs10757278 | 22,114,477 | A/G | 0.54 | 0.42 | 1.70 (1.22 - 2.38) | 0.001 | 0.052 | (7) |
Six most significant SNPs by asymptotic P-value selected. For entire SNP list, see supplement table 1.
SNP, single nucleotide polymorphism; Chr, chromosome; FWER, family-wise error rate; CI, confidence interval; MI, myocardial infarction
The cohort-specific clinical model consists of predictors from the multivariable model in Table 2.
Asymptotic P-value covariate adjusted
Family-wise empirical P value is used to adjust for multiple comparisons.