TABLE 2.
Gene | Product | Locusa | Gene size (bp) | Coordinates | Size of analyzed polymorphic sequence (bp) | G+C content (%) | No. of alleles | Primer sequence (5′-3′)b |
---|---|---|---|---|---|---|---|---|
accA2 | Acetyl coenzyme A | LIC11517 | 1,667 | 1874272-1875939 | 452 | 41.59 | 23 | + TTGATGCTTATGTTTGGGTTCAAT |
carboxylase α subunit | − AGAATCGAATAAATCTAGTTCCT | |||||||
ccmF | Cytochrome c biogenesis | LIC10813 | 2,189 | 983052-985241 | 295 | 40.31 | 17 | + GATATTCCTGTACAATTCCGG |
factor | − GGCAGTTTTCTTTTTAATAAC | |||||||
czcA | Heavy-metal efflux pump | LIC11937 | 3,320 | 2340958-2344278 | 448 | 41.75 | 15 | + TCTTTTGGGAGAAATGATCGG |
− TAAGTTTGAAAGACTACAACG | ||||||||
gcvP | Glycine cleavage system P | LIC10309 | 2,894 | 350674-353568 | 275 | 41.28 | 14 | + AAGAGCTAAAAGATCTGCAGC |
protein | − CTGGCCTTGAAATTTCGAACG | |||||||
groEL | 60-kDa chaperonin (Hsp60) | LIC11335 | 1,640 | 1646985-1648625 | 553 | 42.2 | 26 | + TCGCCTCGTCTCCATCCA |
− TGACGCAGAATCCATGGTAG | ||||||||
polA | DNA polymerase I | LIC10586 | 2,753 | 711562-714315 | 432 | 38.11 | 12 | + TCATAGTCGTTTGAATCTACGGTAAAA |
− ATTAAAGATTCCGGTGTAGAACCAA | ||||||||
recF | DNA replication and repair | LIC10003 | 1,097 | 5062-6159 | 400 | 31.94 | 22 | + CGGCGGAAAGAAGAAAGTT |
protein RecF | − CTCGACTTTTCCTTGTCGAA |
L. interrogans serovar Copenhageni strain Fiocruz L1-130 has been used as a reference.
+, foward primer; −, reverse primer.