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. 2010 Feb 3;5(2):e9007. doi: 10.1371/journal.pone.0009007

Table 2. VNTR markers and their differences between Schu S4 and NE061598.

VNTRa Marker Repeat motif Repeat size (nt)b Genomic Location Repeat copy no., strain SCHU S4 Repeat copy no., strain NE061598
Ft-M1 AAT 3 I (−76) 3 3
Ft-M2 TAAATA 6 G (+12) 4 5
Ft-M3 AATAAGGAT 9 G (+1401) 25 20
Ft-M4 TTGTT 5 G (+55) 3 3
Ft-M5 TTTCTACAAATATCTT 16 I (−21) 3 2
Ft-M6 TTGGTGAACTTTCTTGCTCTT 21 G (+1160) 4 5
Ft-M7 TTTCTACAAATATCTT 16 I (−21) 4 4
Ft-M8 TTTCTACAAATATCTT 16 I (−21) 4 4
Ft-M9 TTTCTACAAATATCTT 16 I (−21) 4 9
Ft-M10 TTTCTACAAATATCTT 16 I (−21) 18 8
Ft-M11 AATTATAAAT 10 I (−113) 5 5
Ft-M12 TAGCTTTTTT 10 I (−113) 2 2
Ft-M13 CTCCAGGACCAA 12 G (+1174) 2 2
Ft-M14 TCATTA 6 G (+67) 3 3
Ft-M15 ATACTT 6 G (+32) 2 2
Ft-M16 TAAAAGTAAG 10 I (+551) 2 2
Ft-M17 TATTTA 6 G (+484) 3 3
Ft-M18 CATTAA 6 I (−52) 4 4
Ft-M19 TAAATTTCTCATA 13 I (−20) 2 2
Ft-M20 ATTATTTTGATC 12 G (+1964) 3 3
Ft-M21 TCAATTA 7 G (+586) 3 4
Ft-M22 AAAAAT 6 G (+2254) 2 2
Ft-M23 AAGTAGCATTGTCACGACCTCCT 23 I (+1864) 2 2
Ft-M24 ATAAATTATTTATTTTGATTA 21 I (−93) 1 1
Ft-M25 GT 2 G (+525) 5 5
VNTR-1 CAAAGACA 8 I (−392) 1 3
VNTR-2 TTTATATAAGT 11 I (−42) 3 2
VNTR-3 GAAAATAA 8 G (+282) 1 2
VNTR-4 TTCTACAAATATCTTT 16 I (+22) 2 3
VNTR-5 AAAATGCCATCATATAGCCAAGATTTTAG 29 I (−32) 1 1
a

FtM1-FtM25 VNTR markers as previously reported by Johansson et al. [7]. New VTNR polymorphisms identified in this study are listed as VNTR1 through VNTR-5.

b

Indicates repeat size in nucleotides.

c

“G” indicates that the repeat is located within an open reading frame (genic) whereas “I” indicates that the repeat is located within an intergenic region. Distance to predicted translation start site is indicated in nucleotides. “+” or “−” indicates that the translation start site is downstream or upstream of repeat motif, respectively (as reported by Johansson et al. [7]).