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. 2010 Feb 3;5(2):e9032. doi: 10.1371/journal.pone.0009032

Figure 2. Phylogenetic tree for the genotype 1 polyprotein sequences.

Figure 2

(A) A maximum-parsimony tree was generated from an alignment of all 47 genotype 1a near full-length polyprotein sequences, with the genotype 1b consensus reference as the out-group. (B) A maximum-parsimony tree was generated from an alignment of all 47 genotype 1b near full-length polyprotein sequences, with the genotype 1a consensus reference as the out-group. Treatment outcome is indicated by SVR (boxed names) and NR (not boxed). AA patient sequences are shown in red; CA patient sequences are in black.