Table I. Kinetic parameters of DEVD- and DVKD-based peptide cleavage by caspase-7 and -3.
Substrate |
kcat |
Km |
kcat/Km |
|||
---|---|---|---|---|---|---|
C7 | C3 | C7 | C3 | C7 | C3 | |
s−1 | μm | m−1 s−1 | ||||
DEVDa | 0.17 ± 0.00 | 8.32 ± 0.32 | 9.0 ± 0.6 | 108 ± 14 | 18,900 ± 1,280 | 76,500 ± 10,800 |
DEVDb | 0.14 ± 0.00 | 8.39 ± 0.47 | 7.9 ± 0.6 | 112 ± 11 | 17,800 ± 1,380 | 74,700 ± 8,700 |
DVKDb | 0.23 ± 0.01 | 0.74 ± 0.03 | 53 ± 6 | 267 ± 27 | 4,330 ± 590 | 2,790 ± 312 |
ADVKDb | 0.11 ± 0.00 | 0.77 ± 0.03 | 35 ± 4 | 243 ± 27 | 3,080 ± 437 | 3,180 ± 389 |
KDVKDb | 0.59 ± 0.02 | 0.79 ± 0.03 | 133 ± 13 | 407 ± 36 | 4,390 ± 494 | 1,940 ± 188 |
AKDVKDb | 0.63 ± 0.02 | 0.48 ± 0.01 | 129 ± 11 | 439 ± 27 | 4,840 ± 444 | 1,100 ± 77 |
QKDVKDb | 0.43 ± 0.02 | 0.19 ± 0.01 | 92 ± 12 | 356 ± 39 | 4,690 ± 657 | 560 ± 69 |
“Quencher”c | 0.25 ± 0.02 | 0.005 ± 0.001 | 173 ± 27 | 192 ± 68 | 1,450 ± 253 | 26 ± 10 |
a Commercial source.
b Synthesized in house.
c Abz-QKDVKDGKYSQY(NO2).