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. 2009 Sep 16;8(12):2700–2714. doi: 10.1074/mcp.M900310-MCP200

Table I. Kinetic parameters of DEVD- and DVKD-based peptide cleavage by caspase-7 and -3.

The catalytic constant (kcat), the Michaelis-Menten constant (Km), and the specificity constant (kcat/Km) of Ac-DEVD-amc, Ac-XXDVKD-amc, and the internally quenched substrate Abz-QKDVKDGKYSQY(NO2) by caspase-7 and -3 were determined as described under “Experimental Procedures.”

Substrate kcat
Km
kcat/Km
C7 C3 C7 C3 C7 C3
s−1 μm m−1 s−1
DEVDa 0.17 ± 0.00 8.32 ± 0.32 9.0 ± 0.6 108 ± 14 18,900 ± 1,280 76,500 ± 10,800
DEVDb 0.14 ± 0.00 8.39 ± 0.47 7.9 ± 0.6 112 ± 11 17,800 ± 1,380 74,700 ± 8,700
DVKDb 0.23 ± 0.01 0.74 ± 0.03 53 ± 6 267 ± 27 4,330 ± 590 2,790 ± 312
ADVKDb 0.11 ± 0.00 0.77 ± 0.03 35 ± 4 243 ± 27 3,080 ± 437 3,180 ± 389
KDVKDb 0.59 ± 0.02 0.79 ± 0.03 133 ± 13 407 ± 36 4,390 ± 494 1,940 ± 188
AKDVKDb 0.63 ± 0.02 0.48 ± 0.01 129 ± 11 439 ± 27 4,840 ± 444 1,100 ± 77
QKDVKDb 0.43 ± 0.02 0.19 ± 0.01 92 ± 12 356 ± 39 4,690 ± 657 560 ± 69
“Quencher”c 0.25 ± 0.02 0.005 ± 0.001 173 ± 27 192 ± 68 1,450 ± 253 26 ± 10

a Commercial source.

b Synthesized in house.

c Abz-QKDVKDGKYSQY(NO2).