Table 1.
Taxon sampling, provenance and GenBank accession numbers.
| Species | Accession | Provenance | Genbank No. | |||
|---|---|---|---|---|---|---|
| nuSSU | nuLSU | TEF1 | RPB2 | |||
| Acrogenospora sphaerocephala | CBS 164.76 | W. Gams, Grande Tinémont, BELGIUM | GU296129 | GU301791 | GU349059 | GU371748 |
| Aliquandostipite khaoyaiensis | CBS 118232 | P. Inderbitzin (AFTOL 1364), Khao Yai NP, THAILAND | AF201453 | GU301796 | GU349048 | FJ238360 |
| Anteaglonium abbreviatum | ANM 925.1 | A.N. Miller (ILLS), Smoky Mts. TN, U.S.A. | — | GQ221877 | GQ221924 | — |
| A. globosum | SMH 5283 | S.M. Huhndorf (F), Indiana Dunes, IN, U.S.A. | — | GQ221911 | GQ221919 | — |
| ANM 925.2 | A.N. Miller (ILLS), Smoky Mts. TN, U.S.A. | — | GQ221879 | GQ221925 | — | |
| A. latirostrum | GKM L100N.2 | G.K. Mugambi (EA), Taita Hills, KENYA | — | GQ221876 | GQ221938 | — |
| GKM 1119 | G.K. Mugambi (EA), Taita Hills, KENYA | — | GQ221874 | GQ221937 | — | |
| A. parvulum | SMH 5210 | S.M. Huhndorf (F), NEW ZEALAND | — | GQ221907 | GQ221917 | — |
| Arthonia caesia | AFTOL 775 | A. Amtoft, NC, U.S.A. | — | FJ469668 | FJ469669 | FJ469670 |
| Botryosphaeria dothidea | CBS 115476 | B. Slippers (AFTOL 946), Crocifisso, SWITZERLAND | DQ677998 | DQ678051 | DQ767637 | DQ677944 |
| Byssothecium circinans | CBS 675.92 | G. Semeniuk (AFTOL 1735), SD, U.S.A. | AY016339 | AY016357 | GU349061 | DQ767646 |
| Cenococcum geophilum | HUNT A1 | K.F. LoBuglio, GenBank | L76616 | — | — | — |
| C. geophilum | CGMONT | K.F. LoBuglio, GenBank | L76617 | — | — | — |
| 010 | K.F. LoBuglio, GenBank | L76618 | — | — | — | |
| Cochliobolus heterostrophus | CBS 134.39 | K. Böning (AFTOL 54) | AY544727 | AY544645 | DQ497603 | DQ247790 |
| Delitschia winteri | CBS 225.62 | J.L. Bezerra (AFTOL 1599), Baarn, NETHERLANDS | DQ678026 | DQ678077 | DQ677922 | DQ677975 |
| Dothidea insculpta | CBS 189.58 | E. Müller (AFTOL921), Maupas, FRANCE | DQ247810 | DQ247802 | DQ471081 | AF107800 |
| D. sambuci | DAOM 231303 | S. Hambleton & B. Shoemaker (AFTOL 274) | AY544722 | AY544681 | DQ497606 | DQ522854 |
| Elsinoë veneta | CBS 150.27 | E.M. Wakefield (AFTOL 1853) | DQ767651 | DQ767658 | DQ767641 | — |
| Encephalographa elisae | EB 0347 | M. Tretiach, (BPI 879773), Prov. Trieste, Karst, ITALY | GU397358 | GU397343 | — | — |
| Farlowiella carmichaeliana | CBS 206.36 | E.W. Mason (AFTOL1787). EUROPE | AY541482 | AY541492 | DQ677931 | DQ677989 |
| F. carmichaeliana | CBS 179.73 | W. Gams, Teutoburger Wald, Neuenheerse, GERMANY | GU296148 | — | — | — |
| Gloniopsis arciformis | GKM L166A | G.K. Mugambi (BPI 879774 = Holotype), Malindi, KENYA | GU323180 | GU323211 | — | — |
| Gp. kenyensis | GKM 1010 | G.K. Mugambi (BPI 879775 = Holotype), EA, Malindi, KENYA | — | GQ221891 | — | — |
| Gp. praelonga | CBS 112415 | S. Marincowitz (PREM), Kogelberg NR, SOUTH AFRICA | FJ161134 | FJ161173 | FJ161090 | FJ161113 |
| CBS 123337 | E.W.A. Boehm (BPI 878725), NJ, U.S.A. | FJ161154 | FJ161195 | FJ161103 | — | |
| CMW 19983 | S. Marincowitz (PREM 57539), Jonkershoek, SOUTH AFRICA | FJ161152 | FJ161193 | — | — | |
| Gp. subrugosa | CBS 123346 | S. Marincowitz (BPI 878735), Gauteng, SOUTH AFRICA | FJ161170 | FJ161210 | — | FJ161131 |
| GKM 1214 | G.K. Mugambi (BPI 879776, EA), Mt. Kenya, KENYA | — | GQ221895 | GU397336 | — | |
| SMH 557 | S.M. Huhndorf (BPI 879777, F), Sancti Spiritus, CUBA | — | GQ221896 | GU397337 | — | |
| Glonium circumserpens | CBS 123342 | G. Kantvilas (BPI 878738), Warra SST, TASMANIA | FJ161168 | FJ161208 | — | — |
| G. circumserpens | CBS 123343 | G. Kantvilas (BPI 878739), Warra SST, TASMANIA | FJ161160 | FJ161200 | FJ161108 | FJ161126 |
| G. stellatum | CBS 207.34 | M.L. Lohman (No. 265), MI, U.S.A. | FJ161140 | FJ161179 | FJ161095 | |
| ANM 32 | A.N. Miller (ILLS), Smoky Mts., TN, U.S.A. | — | GQ221887 | |||
| Guignardia gaultheriae | CBS 447.70 | H.A. van der Aa (AFTOL 1784), Seattle, WA, U.S.A. | — | DQ678089 | DQ677987 | |
| Herpotrichia diffusa | CBS 250.62 | M.C. Pande (AFTOL 1588), Uttar Pradesh, INDIA | DQ678019 | DQ678071 | DQ677915 | DQ677968 |
| Hysterium angustatum | CBS 236.34 | M.L. Lohman (No. 309), WI, U.S.A. | GU397359 | FJ161180 | FJ161096 | FJ161117 |
| CBS 123334 | E.W.A. Boehm (BPI 878724), Sussex Co., NJ, U.S.A. | FJ161167 | FJ161207 | FJ161111 | FJ161129 | |
| CMW 20409 | S. Marincowitz (PREM 57585), Kleinmond, SOUTH AFRICA | FJ161153 | FJ161194 | — | — | |
| SMH 5211.0 | S.M. Huhndorf (F), NEW ZEALAND | GU397360 | GQ221905 | — | GQ221923 | |
| GKM 243A | G.K. Mugambi (EA), Malindi, KENYA | — | GQ221899 | — | — | |
| SMH 5216 | S.M. Huhndorf (F), NEW ZEALAND | — | — | — | GQ221933 | |
| ANM 85 | A.N. Miller (ILLS), Smoky Mts., TN, U.S.A. | — | GQ221898 | — | — | |
| H. barrianum | ANM 1495 | A.N. Miller (ILLS59908 = Holotype, BPI879783 = Paratype), TN, U.S.A. | GU323182 | GQ221885 | — | — |
| ANM 1442 | A.N. Miller (ILLS 59907, BPI 879784), Smoky Mts., TN, U.S.A. | GU323181 | GQ221884 | — | — | |
| H. hyalinum | CBS 237.34 | M.L. Lohman (No. 425), MA, U.S.A. | FJ161141 | FJ161181 | — | — |
| H. pulicare | CBS 123377 | E.W.A. Boehm (BPI 878723), NY, U.S.A. | FJ161161 | FJ161201 | FJ161109 | FJ161127 |
| H. vermiforme | GKM 1234 | G.K. Mugambi (BPI 879785, EA), Mt. Kenya, KENYA | — | GQ221897 | — | — |
| Hysterobrevium constrictum | SMH 5211.1 | S.M. Huhndorf (F), NEW ZEALAND | GU397361 | GQ221905 | — | — |
| Hb. mori | CBS 245.34 | M.L. Lohman (No. 6), MI, U.S.A. | FJ161143 | — | FJ161098 | — |
| CBS 123563 | E.W.A. Boehm (BPI 878731), NY, U.S.A. | FJ161155 | FJ161196 | FJ161104 | — | |
| CBS 123564 | E.W.A. Boehm (BPI 878732), NJ, U.S.A. | FJ161158 | FJ161198 | FJ161106 | — | |
| CBS 123336 | E.W.A. Boehm (BPI 878733), NJ, U.S.A. | FJ161164 | FJ161204 | — | — | |
| CBS 123335 | E.W.A. Boehm (BPI 878734), NY, U.S.A. | FJ161162 | FJ161202 | — | — | |
| SMH 5273 | S.M. Huhndorf (BPI 879787, F), IN, U.S.A. | — | GQ221910 | GQ221936 | — | |
| GKM 1013 | G.K. Mugambi (BPI 879788, EA), Malindi, KENYA | — | GU397344 | GU397338 | — | |
| SMH 5286 | G.K. Mugambi (BPI 879789, EA), MI, U.S.A. | — | GU397345 | — | — | |
| Hb. smilacis | CBS 114601 | O. Constantinescu, as Gp. curvata (Fr.) Sacc., SWEDEN | FJ161135 | FJ161174 | FJ161091 | FJ161114 |
| CBS 200.34 | M.L. Lohman (No. 29), as Gp. gerardiana Sacc., MI, U.S.A. | FJ161138 | FJ161177 | — | — | |
| CMW 18053 | S. Marincowitz (PREM 57546), Kirstenbosch, SOUTH AFRICA | FJ161150 | FJ161191 | — | — | |
| SMH 5280 | G.K. Mugambi (EA), IN, U.S.A. | GU323183 | GQ221912 | — | GU371784 | |
| GKM 426N | G.K. Mugambi (EA), Taita Hills, KENYA | — | GQ221901 | — | — | |
| Hysterographium fraxini | CBS 109.43 | H. Zogg, SWITZERLAND | FJ161132 | FJ161171 | FJ161088 | — |
| Hg. fraxini | CBS 242.34 | M.L. Lohman (No. 300), Manitoba, CANADA | — | FJ161189 | — | |
| Hysteropatella clavispora | CBS 247.34 | M.L. Lohman (No. 143), IN, U.S.A. | DQ678006 | AY541493 | DQ677901 | DQ677955 |
| Hp. elliptica | CBS 935.97 | G. Marson (AFTOL 1790), Fentange, LUXEMBOURG | EF495114 | DQ767657 | DQ767640 | DQ767647 |
| Jahnula aquatica | R68-1 | Campbell et al. 2007 | EF175633 | DF175655 | — | — |
| Leptosphaeria maculans | DAOM 229267 | S. Hambleton & B. Shoemaker (AFTOL 277), CANADA | DQ470993 | DQ470946 | DQ471062 | DQ470894 |
| Lophium elegans | EB 0366 | A. Gardiennet (BPI 879792), Til-Chatel, FRANCE | GU323184 | GU323210 | — | — |
| L. mytilinum | CBS 269.34 | M.L. Lohman (AFTOL 1609), MI, U.S.A. | DQ678030 | DQ678081 | DQ677926 | DQ677979 |
| CBS 114111 | K. & L. Holm & O Constantinescu, Uppland, SWEDEN | EF596819 | EF596819 | — | — | |
| CBS 123344 | E.W.A. Boehm (BPI 878736), NY, U.S.A. | FJ161163 | FJ161203 | FJ161110 | FJ161128 | |
| Mycosphaerella punctiformis | CBS 113265 | G. Verkley (AFTOL 942), Utrecht, NETHERLANDS | DQ471017 | DQ470968 | DQ471092 | DQ470920 |
| Myriangium duriaei | AFTOL 1304 | L. Grodsinsky (CBS 260.36), Delta del Parana, ARGENTINA | AY016347 | DQ678059 | DQ677900 | DQ677954 |
| Mytilinidion acicola | EB 0379 | A. Gardiennet (BPI 879793), Veronnes, FRANCE | GU397362 | GU397346 | — | GU397355 |
| M. acicola | EB 0349 | A. Gardiennet (BPI 879794), Fixey, Combe Laveau, FRANCE | GU323185 | GU323209 | — | GU371757 |
| M. andinense | CBS 123562 | M.I. Messuti (BPI 878737), Barrio Don Orione, ARGENTINA. | FJ161159 | FJ161199 | FJ161107 | FJ161125 |
| M. australe | CBS 301.34 | A.H. Smith & M.L. Lohman, (type culture), LA, U.S.A. | — | FJ161183 | — | — |
| M. californicum | EB 0385 | A. Gardiennet (BPI 879795), Bois de la Chamage, FRANCE | GU323186 | GU323208 | — | — |
| M. mytilinellum | CBS 303.34 | M.L. Lohman (No. 281), as M. laeviusculum, MI, U.S.A. | FJ161144 | FJ161184 | FJ161100 | FJ161119 |
| EB 0386 | A. Gardiennet (BPI 879796), Boissenois, FRANCE | GU397363 | GU397347 | — | GU397356 | |
| M. resinicola | CBS 304.34 | M.L. Lohman, No. 260, MI, U.S.A. | FJ161145 | FJ161185 | FJ161101 | FJ161120 |
| M. rhenanum | CBS 135.45 | NCTC 6434 (1945), as M. karstenii | FJ161136 | FJ161175 | FJ161092 | FJ161115 |
| EB 0341 | A. Brissard, Guesnes, FRANCE | GU323187 | GU323207 | — | — | |
| M. scolecosporum | CBS 305.34 | A.H. Smith & M.L. Lohman, WI, U.S.A. | FJ161146 | FJ161186 | FJ161102 | FJ161121 |
| M. thujarum | EB 0268 | E.W.A. Boehm (BPI 879797), NY, U.S.A. | GU323188 | GU323206 | — | — |
| M. tortile | EB 0377 | A. Gardiennet (BPI 879798), Veronnes, FRANCE | GU323189 | GU323205 | — | — |
| Oedohysterium insidens | CBS 238.34 | M.L. Lohman (No. 308) MI, U.S.A. | FJ161142 | FJ161182 | FJ161097 | FJ161118 |
| Od. insidens | ANM 1443 | A.N. Miller (BPI 879799, ILLS), Smoky Mts., TN, U.S.A. | GU323190 | GQ221882 | — | GU371785 |
| Od. pulchrum | DQ 402184 | J. Checa (DAOM 234345), Guanacaste, COSTA RICA | DQ402184 | — | — | — |
| Od. sinense | CBS 123345 | M. Gryzenhout (BPI 878730), Limpopo, SOUTH AFRICA | FJ161169 | FJ161209 | — | FJ161130 |
| EB 0339 | E.W.A. Boehm (BPI 879800), NJ, U.S.A. | GU397364 | GU397348 | GU397339 | GU397357 | |
| Opegrapha dolomitica | DUKE 0047528 | C. Gueidan (AFTOL 993), CROATIA | DQ883706 | — | DQ883732 | DQ883714 |
| Ostreichnion curtisii | CBS 198.34 | M.L. Lohman (No. 464), GA, U.S.A. | FJ161137 | FJ161176 | FJ161093 | — |
| O. sassafras | CBS 322.34 | M.L. Lohman (No. 530), NC, U.S.A. | FJ161148 | FJ161188 | — | FJ161122 |
| Patellaria atrata | CBS 958.97 | G. Marson, Wasserbillig, Bahnhof, LUXEMBOURG | GU296181 | GU301855 | GU349038 | GU371726 |
| Phoma herbarum | CBS 276.37 | AFTOL 1575 | DQ678014 | DQ678066 | DQ677909 | DQ677962 |
| Pleospora herbarum | CBS 191.86 | E.G. Simmons, AFTOL_940, Uttar Pradesh, INDIA | DQ247812 | DQ247804 | DQ471090 | DQ247794 |
| Psiloglonium araucanum | CBS 112412 | S. Marincowitz (PREM 57570), Kirstenbosch, SOUTH AFRICA | FJ161133 | FJ161172 | FJ161089 | FJ161112 |
| CMW 18760 | S. Marincowitz (PREM 57569), Kirstenbosch, SOUTH AFRICA | FJ161151 | FJ161192 | — | — | |
| CMW 17941 | S. Marincowitz (PREM 57566), Jonkershoek, SOUTH AFRICA | FJ161149 | FJ161190 | — | — | |
| P. clavisporum | CBS 123338 | E.W.A. Boehm (BPI 878726), NJ, U.S.A. | FJ161156 | FJ161197 | — | FJ161123 |
| CBS 123339 | E.W.A. Boehm (BPI 878727), NJ, U.S.A. | FJ161157 | FJ167526 | FJ161105 | FJ161124 | |
| CBS 123340 | E.W.A. Boehm (BPI 878728), NJ, U.S.A. | FJ161165 | FJ161205 | — | — | |
| CBS 123341 | E.W.A. Boehm (BPI 878729), NJ, U.S.A. | FJ161166 | FJ161206 | — | — | |
| GKM 344A | G.K. Mugambi (BPI 879801, EA), Malindi, KENYA | GU397365 | GQ221889 | — | — | |
| GKM L172A | G.K. Mugambi (EA), Malindi, KENYA | GU323192 | GU323204 | — | — | |
| P. simulans | CBS 206.34 | M.L. Lohman, MI, U.S.A. | FJ161139 | FJ161178 | FJ161094 | FJ161116 |
| ANM 1557 | A.N. Miller (BPI 879803, ILLS), Smoky Mts., TN, U.S.A. | — | GQ221873 | GQ221920 | — | |
| Quasiconcha reticulata | EB QR | M. Blackwell (RLG 14189), AZ, U.S.A. | — | GU397349 | — | — |
| Roccella fuciformis | AFTOL 126 | Diederich 15572 | AY584678 | AY584654 | — | DQ782866 |
| Rhytidhysteron hysterinum | EB 0351 | A. Gardiennet (BPI 879804), Gevrey-Chambertin, FRANCE | — | GU397350 | GU397340 | — |
| R. opuntiae | GKM 1190 | G.K. Mugambi (BPI 879805, EA), Malindi, KENYA | — | GQ221892 | GU397341 | — |
| R. rufulum | CBS 306.38 | R.K. Voorhees (AFTOL 2109), EUROPE | AF164375 | FJ469672 | GU349031 | — |
| GKM 361A | G.K. Mugambi (BPI 879806, EA), Malindi, KENYA | GU296192 | GQ221893 | GU349031 | — | |
| EB 0381 | E. Nkansah (BPI 879807), Kwame Nkrumah, GHANA | GU397366 | GU397351 | — | — | |
| EB 0382 | E. Nkansah (BPI 879808), Kwame Nkrumah, GHANA | — | GU397352 | — | — | |
| EB 0383 | E. Nkansah (BPI 879809), Kwame Nkrumah, GHANA | GU397353 | GU397367 | — | — | |
| EB 0384 | E. Nkansah (BPI 879810), Kwame Nkrumah, GHANA | GU397368 | GU397354 | — | — | |
| Scorias spongiosa | CBS 325.33 | L.H. Leonian (AFTOL 1594) | DQ678024 | DQ678075 | DQ677920 | DQ677973 |
| Simonyella variegata | AFTOL 80 | DUKE Printzen 14310a | AY584669 | — | DQ782891 | DQ782861 |
AFTOL: Assembling the Fungal Tree of Life; BPI: United States USDA ARS National Fungus Collections, Beltsville, MD; CBS: Centraalbureau voor Schimmelcultures, Utrecht, The Netherlands; CMW: Forestry & Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, Republic of South Africa; DAOM: National Mycological Herbarium, Department of Agriculture, Ottawa, Ontario, Canada; DUKE: Duke University Herbarium, Durham, North Carolina; EA: National Museums of Kenya East African Herbarium, Nairobi, Kenya; F: Field Museum of Natural History, Chicago, IL; ILLS: Illinois Natural History Survey Herbarium, Champaign, IL; PREM: The South African National Collection of Fungi, National Mycological Herbarium, Pretoria, South Africa; RLG: The Robert L. Gilbertson Mycological Herbarium at the University of Arizona. Culture and specimen abbreviations: ANM: A.N. Miller; EB: E.W.A. Boehm; GKM: G.K. Mugambi, SMH: S.M. Huhndorf. GenBank accessions marked in bold represent new sequences generated in the current study.