Table 1.
Taxa used in the study with those newly sequenced for LSU and TEF genes shown in bold, the rest obtained from GenBank.
| Taxon | Collection locality | Collector and accession number | LSU | TEF |
|---|---|---|---|---|
| Alternaria alternata | DQ678082 | DQ677927 | ||
| Arthopyrenia salicis I | AY538339 | |||
| Arthopyrenia salicis II | AY607730 | |||
| Arthopyrenia sp. | Costa Rica, Puntarenas, Monteverde | S.M. Huhndorf, SMH4900 | GU385149 | |
| Bertiella macrospora I | Costa Rica, Puntarenas, Monteverde | I. Lopez, IL5005 | GU385150 | |
| Bertiella macrospora II | Kenya, Coast Province, Taita District, Taita Hills, Ngangao forest | G.K. Mugambi, GKM L122N | GU327743 | |
| Bertiella macrospora III | U.S.A., Michigan, Huron Mt. Club | S.M. Huhndorf, SMH3953 | GU327744 | |
| Bimuria novae-zelandiae | AY016356 | DQ471087 | ||
| Byssosphaeria jamaicana I | U.S.A., Puerto Rico, Luquillo Mts. | S.M. Huhndorf, SMH1403 | GU385152 | GU327746 |
| Byssosphaeria jamaicana II | U.S.A., Puerto Rico, Luquillo Mts. | S.M. Huhndorf, SMH3085 | GU385154 | |
| Byssosphaeria jamaicana III | Panama, Barro Colorado Island | S.M. Huhndorf, SMH3464 | GU385153 | |
| Byssosphaeria rhodomphala I | Kenya, Coast Province, Taita District, Taita Hills, Ngangao forest | G.K. Mugambi, GKM L153N | GU385157 | GU327747 |
| Byssosphaeria rhodomphala II | U.S.A., North Carolina, Smoky Mts. | A.N. Miller, ANM942 | GU385160 | |
| Byssosphaeria rhodomphala III | U.S.A., Puerto Rico, Luquillo Mts. | S.M. Huhndorf, SMH3086 | GU385155 | |
| Byssosphaeria rhodomphala IV | Panama, Barro Colorado Island | S.M. Huhndorf, SMH3402 | GU385170 | |
| Byssosphaeria rhodomphala V | Ecuador, Yasuni | F.A. Fernández, A.N. Miller, SMH4363 | GU385156 | |
| Byssosphaeria salebrosa | Costa Rica, San Jose, San Gerardo de Dota | S.M. Huhndorf SMH2387 | GU385162 | GU327748 |
| Byssosphaeria schiedermayeriana I | Kenya, Coast Province, Taita District, Taita Hills, Ngangao forest | G.K. Mugambi, GKM152N | GU385168 | GU327749 |
| Byssosphaeria schiedermayeriana II | Kenya, Coast Province, Taita District, Taita Hills, Ngangao forest | G.K. Mugambi, GKM1197 | GU385161 | GU327750 |
| Byssosphaeria schiedermayeriana III | U.S.A. Puerto Rico, Luquillo Mts. | S.M. Huhndorf, SMH1296 | GU385158 | |
| Byssosphaeria schiedermayeriana IV | U.S.A. Puerto Rico, Luquillo Mts. | S.M. Huhndorf, SMH1816 | GU385159 | |
| Byssosphaeria schiedermayeriana V | U.S.A. Puerto Rico, Luquillo Mts. | S.M. Huhndorf, SMH3157 | GU385163 | GU327745 |
| Byssosphaeria villosa | Kenya, Coast Province, Taita District, Taita Hills, Ngangao forest | G.M. Mugambi, GKM204N | GU385151 | GU327751 |
| Byssothecium circinans | AY016357 | |||
| Cochliobolus eragrostidis | AB288215 | |||
| Cochliobolus geniculatus | AB444670 | |||
| Cochliobolus heterostrophus | AY544645 | DQ497603 | ||
| Cochliobolus lunatus | AB444681 | |||
| Cochliobolus pallescens | AB288225 | |||
| Cochliobolus sativus | DQ678045 | |||
| Cochliobolus verruculosus | AB444680 | |||
| Delitschia cf. anisomera | Kenya, Mt. Kenya Forest, along the track past Sirimon entrance | G.K. Mugambi, GKM1205 | GU385171 | |
| Delitschia chaetomioides I | Kenya, Rift Valley Province, Lembus forest along Eldoret — Elderma Ravine road | G.K. Mugambi, GKM1283 | GU385172 | GU327752 |
| Delitschia chaetomioides II | Costa Rica, Guanacaste, Bosque Encantado | S.M. Huhndorf, SMH3253.2 | GU390656 | GU327753 |
| Delitschia didyma | DQ384090 | |||
| Delitschia winteri I | DQ384091 | |||
| Delitschia winteri II | DQ678077 | DQ677922 | ||
| Dothidea ribesia | AY016360 | |||
| Gloniopsis praelonga I | FJ161193 | |||
| Gloniopsis praelonga II | FJ161195 | FJ161103 | ||
| Glonium stellatum | FJ161179 | FJ161095 | ||
| Helicomyces roseus | DQ678083 | DQ677928 | ||
| Herpotrichia cf. herpotrichoides I | Kenya, Coast Province, Taita District, Taita Hills, Ngangao forest | G.K. Mugambi, GKM212N | GU385169 | |
| Herpotrichia cf. herpotrichoides II | U.S.A., Wisconsin, Upham Woods | S.M. Huhndorf, SMH5167 | GU385175 | |
| Herpotrichia diffusa (= Byssosphaeria) | DQ678071 | |||
| Herpotrichia juniperi I | DQ384093 | |||
| Herpotrichia juniperi II | DQ678080 | DQ677925 | ||
| Herpotrichia macrotricha I | Kenya, Coast Province, Taita District, Taita Hills, Ngangao forest | G.K. Mugambi, GKM196N | GU385176 | GU327755 |
| Herpotrichia macrotricha II | Kenya, Rift Valley Province, Kajiando District, Ngong hills forest | G.K. Mugambi, GKM1128 | GU385178 | |
| Herpotrichia macrotricha III | Kenya, Coast Province, Taita District, Taita Hills, Ngangao forest | G.K. Mugambi, GKM1193 | GU385179 | |
| Herpotrichia macrotricha IV | U.S.A., Puerto Rico, Toro Negro Forest | S.M. Huhndorf, SMH269 | GU385177 | GU327756 |
| Herpotrichia macrotricha V | Costa Rica, Puntarenas, Monteverde | S.M. Huhndorf, SMH4913 | GU385164 | GU327754 |
| Hypsostroma caimetalensis | Kenya, Coast Province, Malindi District, Arabuko-Sokoke National Park | G.K. Mugambi, GKM1165 | GU385180 | |
| Hypsostroma saxicola | Costa Rica, San Jose, INBio Parque | S.M. Huhndorf, SMH5005 | GU385181 | |
| Hysterium angustatum | FJ161194 | |||
| Hysterographium mori | FJ161196 | FJ161104 | ||
| Leptosphaeria doliolum I | U43473 | |||
| Leptosphaeria doliolum II | U43474 | |||
| Leptosphaeria doliolum III | U43475 | |||
| Leptosphaeria macrospora | DQ384092 | |||
| Leptosphaeria sp. | Kenya, Rift Valley Province, Kajiando District, Ngong hills forest | G.K. Mugambi, GKM1090 | GU327757 | |
| Letendraea helminthicola | AY016362 | |||
| Lophiostoma alpigenum | Kenya, Rift Valley Province, Kajiando District, Ololua forest | G.K. Mugambi, GKM1091b | GU385193 | GU327758 |
| Lophiostoma arundinis | DQ782384 | DQ782387 | ||
| Lophiostoma caulium | DQ528763 | |||
| Lophiostoma crenatum | DQ678069 | DQ677912 | ||
| Lophiostoma fuckelii I | U.S.A., Puerto Rico, Luquillo Mts. | S.M. Huhndorf SMH1371 | GU385186 | |
| Lophiostoma fuckelii II | Kenya, Nairobi Province, Nairobi Museum Botanic Garden grounds | G.K. Mugambi, GKM1063 | GU385192 | GU327759 |
| Lophiostoma fuckelii III | DQ399531 | |||
| Lophiostoma heterospora | AY016369 | DQ497609 | ||
| Lophiostoma macrostomum I | AB433273 | |||
| Lophiostoma macrostomum II | AB433274 | |||
| Lophiostoma quadrinucleatum | Kenya, Central Province, Nyeri district, Mt. Kenya forest, behind Bantu lodge | G.K. Mugambi, GKM1233 | GU385184 | GU327760 |
| Lophiostoma sagittiforme | AB369267 | |||
| Lophiostoma triseptatum I | U.S.A., Michigan, Huron Mt. Club | S.M. Huhndorf, SMH2591 | GU385183 | |
| Lophiostoma triseptatum II | U.S.A., Michigan, Headland Park | S.M. Huhndorf, SMH5287 | GU385187 | |
| Lophium mytilinum I | EF596819 | |||
| Lophium mytilinum II | DQ678081 | DQ677926 | ||
| Massariosphaeria grandispora | EF165034 | |||
| Massariosphaeria roumeguerei | EF165032 | |||
| Massariosphaeria triseptata | EF165031 | |||
| Massariosphaeria typhicola | EF165033 | |||
| Melanomma pulvis pyrius I | DQ384095 | |||
| Melanomma pulvis pyrius II | FJ201984 | |||
| Melanomma pulvis pyrius III | FJ201986 | |||
| Melanomma pulvis pyrius IV | FJ201988 | |||
| Melanomma pulvis-pyrius V | U.S.A., North Carolina, Highlands Biological Station | S.M. Huhndorf, SMH3291 | GU385197 | |
| Melanomma rhododendri | U.S.A., Tennessee, Smoky Mts | A.N. Miller, ANM73 | GU385198 | |
| Misturatosphaeria aurantonotata I | Kenya, Rift Valley Province, Kajiando District, Ngong hills forest | G.K. Mugambi, GKM1238 | GU385173 | GU327761 |
| Misturatosphaeria aurantonotata II | Kenya, Rift Valley Province, Lembus forest, along Eldoret — Elderma Ravine road | G.K. Mugambi, GKM1280 | GU385174 | GU327762 |
| Misturatosphaeria claviformis | Kenya, Central Province, Nyeri District, Mt. Kenya forest, behind Bantu lodge | G.K. Mugambi, GKM1210 | GU385212 | GU327763 |
| Misturatosphaeria cruciformis | U.S.A., Illinois, Swallow Cliff Woods | S.M. Huhndorf, SMH5151 | GU385211 | |
| Misturatosphaeria kenyensis I | Kenya, Coast Province, Taita District, Taita Hills, Ngango forest | G.K. Mugambi, GKM194N | GU327764 | |
| Misturatosphaeria kenyensis II | Kenya, Coast Province, Taita District, Taita hills, Ngangao forest | G.K. Mugambi, GKM234N | GU385188 | GU327765 |
| Misturatosphaeria kenyensis III | Kenya, Coast Province, Malindi District, Arabuko-Sokoke National Park | G.K. Mugambi, GKM L100Na | GU385189 | GU327766 |
| Misturatosphaeria kenyensis IV | Kenya, Coast Province, Taita District, Taita hills, Ngangao forest | G.K. Mugambi, GKM1195 | GU385194 | GU327767 |
| Misturatosphaeria minima I | Kenya, Coast Province, Taita District, Taita hills, Ngangao forest | G.K. Mugambi, GKM169N | GU385165 | GU327768 |
| Misturatosphaeria minima II | U.S.A., North Carolina, Smoky Mts | A.N. Miller, ANM60 | GU385182 | |
| Misturatosphaeria minima III | U.S.A., North Carolina, Smoky Mts | A.N. Miller, ANM933 | GU385195 | |
| Misturatosphaeria minima IV | Costa Rica, San Jose, San Gerardo de Dota | S.M. Huhndorf, SMH2448 | GU385166 | |
| Misturatosphaeria sp. | French Guiana, Saül | S.M. Huhndorf, SMH3747 | GU385196 | |
| Misturatosphaeria tennesseensis | U.S.A., Tennessee, Smoky Mts | A.N. Miller, ANM911 | GU385207 | GU327769 |
| Misturatosphaeria uniseptata | Ecuador, Yasuni | F.A. Fernández, A.N. Miller, SMH4330 | GU385167 | GU327770 |
| Misturatosphaeria uniseriata | U.S.A., Tennessee, Smoky Mts | A.N. Miller, ANM909 | GU385206 | |
| Montagnula opulenta | DQ678086 | |||
| Munkovalsaria appendiculata | AY772016 | |||
| Munkovalsaria sp. I | Kenya, Nairobi Province, Nairobi Museum Botanic Garden grounds | G.K. Mugambi, GKM1286 | GU327771 | |
| Mytilinidion australe | FJ161183 | |||
| Ostropella albocincta I | Panama, Barro Colorado Island | S.M. Huhndorf, SMH3536 | GU385200 | |
| Ostropella striata | Costa Rica, Arenal | SMH1854 | GU385203 | |
| Phaeodothis winteri | DQ678073 | DQ677917 | ||
| Phaeosphaeria eustoma | DQ678063 | DQ677906 | ||
| Platystomum sp. | U.S.A., Wisconsin, Upham Woods | S.M. Huhndorf, SMH5174 | GU385199 | |
| Platystomum compressum | Kenya, Coast Province, Malindi District, Arabuko-Sokoke National Park | G.K. Mugambi, GKM1048 | GU385204 | GU327772 |
| Pleomassaria siparia | DQ678078 | DQ677923 | ||
| Pleomassariaceae | New Zealand, Auckland, Wenderholm Regional Park | S.M. Huhndorf, SMH5232 | GU385205 | GU327773 |
| Pleospora herbarum I | DQ247804 | DQ471090 | ||
| Pleospora herbarum II | DQ678049 | |||
| Pleospora herbarum III | DQ677888 | |||
| Pleospora herbarum IV | AF382386 | |||
| Pleospora herbarum V | U43476 | |||
| Pleospora sp. | EF177848 | |||
| Preussia terricola | DQ471137 | |||
| Pseudotrichia guatopoensis I | U.S.A., Puerto Rico, Luquillo Mts | S.M. Huhndorf, SMH1288 | GU385208 | |
| Pseudotrichia guatopoensis II | Costa Rica, San Jose, San Gerardo de Dota | S.M. Huhndorf, SMH2383 | GU327775 | |
| Pseudotrichia guatopoensis III | Costa Rica, Alajuela, Volcan Arenal | S.M. Huhndorf, SMH4535 | GU385202 | GU327774 |
| Pseudotrichia mutabilis I | U.S.A., Wisconsin, New Glarus State Park | S.M. Huhndorf, SMH1541 | GU385209 | |
| Pseudotrichia mutabilis II | U.S.A., Michigan, Headlands Park | S.M. Huhndorf, SMH5288 | GU385210 | |
| Psiloglonium clavisporum II | FJ167526 | FJ161105 | ||
| Pyrenophora phaeocomes | DQ499596 | |||
| Pyrenophora tritici repentis | AY544672 | |||
| Setosphaeria monoceras | AY016368 | |||
| Stylodothis puccinioides | AY004342 | |||
| Thyridaria macrostomoides I | Kenya, Coast Province, Malindi District, Arabuko-Sokoke National Park | G.K. Mugambi, GKM1033 | GU385190 | GU327776 |
| Thyridaria macrostomoides II | Kenya, Coast Province, Taita District, Taita Hills, Ngangao forest | G.K. Mugambi, GKM224N | GU385191 | GU327777 |
| Thyridaria macrostomoides III | Kenya, Coast Province, Malindi District, Arabuko-Sokoke National Park | G.K. Mugambi, GKM1159 | GU385185 | GU327778 |
| Trematosphaeria pertusa I | U.S.A., Wisconsin, Madison, Picnic Point Park | S.M. Huhndorf, SMH1448 | GU385213 | |
| Trematosphaeria pertusa II | FJ201990 | |||
| Trematosphaeria pertusa III | FJ201992 | |||
| Tubeufia cerea | DQ470982 | |||
| Tubeufia helicomyces | DQ767638 | |||
| Tubeufia paludosa | AY849966 | |||
| Ulospora bilgramii | DQ678076 | |||
| Verruculina enalia | DQ678079 | |||
| Westerdykella cylindrica | AY004343 | |||
| Xenolophium sp. | Panama, Barro Colorado Island | S.M. Huhndorf, SMH3537 | GU385201 | |
| Xenolophium applanatum | U.S.A., Puerto Rico, Luquillo Mts | S.M. Huhndorf, SMH2055 | GU385214 | |
| Xenolophium guianense | Ecuador, Yasuni | F.A. Fernández, A.N. Miller, SMH4711 | GU385215 | |
| Xenolophium pachythele | French Guiana, Saül | S.M. Huhndorf, SMH996 | GU327779 |