Table 1.
Taxa included in this study with GenBank accession numbers and collection information. Numbers following taxon names are DNA identification numbers used in this study.
| Taxon | Collection | Accession Number | |
|---|---|---|---|
| nuLSU | mtSSU | ||
| Acrocordia subglobosa (HTL940) | Palice s.n., Poland (F) | GU327681 | |
| Amphisphaeria umbrina | FJ176863 | FJ713609 | |
| Anisomeridium ubianum (94) | Lumbsch 19845j, Fiji (F) | GU327709 | GU327682 |
| Aptrootia terricola | DQ328995 | ||
| Arthonia caesia | FJ469668 | FJ469671 | |
| Arthonia didyma | EU704083 | EU704047 | |
| Arthonia dispersa | AY571381 | AY571383 | |
| Arthonia radiate | EU704048 | ||
| Arthonia ruana (79B) | Zimmerman 1117, Germany (F) | GU327683 | |
| Arthonia rubrocincta (129) | Nelsen 4010, U.S.A. (F) | GU327684 | |
| Arthopyrenia salicis | AY538339 | AY538345 | |
| AY607730 | AY607742 | ||
| Ascobolus crenulatus | AY544678 | FJ713607 | |
| Astrothelium cinnamomeum | AY584652 | AY584632 | |
| Astrothelium confusum (98) | Nelsen 4004a, Peru (F) | GU327710 | GU327685 |
| Bacidia schweinitzii | DQ782911 | DQ972998 | |
| Bathelium degenerans | DQ328987 | ||
| DQ328988 | |||
| Bimuria novae-zelandiae | AY016356 | FJ190605 | |
| Bionectria ochroleuca | AY489716 | FJ713619 | |
| Botryosphaeria dothidea | DQ678051 | FJ190612 | |
| Botryosphaeria stevensii | DQ678064 | ||
| Botryosphaeria tsugae | DQ767655 | ||
| Botryotinia fuckeliana | AY544651 | AY544732 | |
| Caliciopsis orientalis | DQ470987 | FJ190654 | |
| Caliciopsis pinea | DQ678097 | FJ190653 | |
| Camarops ustulinoides | DQ470941 | FJ190588 | |
| Capnodium coffeae | DQ247800 | FJ190609 | |
| Capronia pilosella | DQ823099 | FJ225725 | |
| Cercospora beticola | DQ678091 | FJ190647 | |
| Cheilymenia stercorea | AY544661 | AY544733 | |
| Chiodecton natalense | EU704085 | EU704051 | |
| Chlorociboria aeruginosa | AY544669 | AY544734 | |
| Chrysothrix flavovirens (L466) | Perlmutter 786, U.S.A. (NCU) | GU327711 | GU327686 |
| Chrysothrix xanthina (126) | Nelsen 4005, U.S.A. (F) | GU327712 | GU327687 |
| Cladosporium cladosporioides | DQ678057 | FJ190628 | |
| Cochliobolus heterostrophus | AY544645 | AY544737 | |
| Cochliobolus sativus | DQ678045 | FJ190589 | |
| Columnosphaeria fagi | DQ470956 | FJ713608 | |
| Combea mollusca | AY571382 | AY571384 | |
| Coniothyrium palmarum | DQ767653 | FJ190638 | |
| Cordyceps capitata | AY489721 | FJ713628 | |
| Cryptothecia assimilis (86B) | Lumbsch 19815l, Fiji (F) | GU327688 | |
| Cryptothecia candida | EU704052 | ||
| Cryptothelium amazonum (47) | Nelsen 4000a, Peru (F) | GU327713 | GU327689 |
| Cryptothelium cecidiogenum | DQ328991 | ||
| Cryptothelium sepultum (63C) | Nelsen 4001a, Peru (F) | GU327714 | GU327690 |
| Cudoniella cf. clavus | DQ470944 | FJ713604 | |
| Cystocoleus ebeneus | EU048578 | EU048584 | |
| EU048579 | EU048585 | ||
| EU048580 | EU048586 | ||
| EU048587 | |||
| Delitschia winteri | DQ678077 | FJ190644 | |
| Dendrographa alectoroides (100) | Lumbsch 19914g, U.S.A. (F) | GU327715 | GU327691 |
| Dendrographa leucophaea f. minor | AF279382 | AY548811 | |
| Dendryphiella arenaria | DQ470971 | FJ190617 | |
| Dermatocarpon miniatum | AY584644 | AY584616 | |
| Diaporthe eres | AF408350 | FJ190607 | |
| Dichosporidium boschianum (89B) | Lumbsch 19815a, Fiji (F) | GU327716 | GU327692 |
| Dirina catalinariae | EF081387 | ||
| Dothidea insculpta | DQ247802 | FJ190602 | |
| Dothidea sambuci | AY544681 | AY544739 | |
| Dothiora cannabinae | DQ470984 | FJ190636 | |
| Eleutherascus lectardii | DQ470966 | FJ190606 | |
| Elsinoe centrolobi | DQ678094 | FJ190651 | |
| Elsinoe phaseoli | DQ678095 | FJ190652 | |
| Elsinoe veneta | DQ767658 | FJ190650 | |
| Endocarpon pallidulum | DQ823097 | FJ225674 | |
| Enterographa anguinella | EU704086 | EU704054 | |
| Enterographa crassa | EU704088 | EU704056 | |
| Erythrodecton granulatum | EU704090 | EU704058 | |
| Eupenicillium javanicum | EF413621 | FJ225778 | |
| Exophiala salmonis | EF413609 | FJ225745 | |
| Flavobathelium epiphyllum (67) | Lücking s.n. Panama (F) | GU327717 | |
| Glomerella cingulata | AF543786 | FJ190626 | |
| Glyphium elatum | AF346420 | AF346425 | |
| Gnomonia gnomon | AF408361 | FJ190615 | |
| Guignardia gaulteriae | DQ678089 | FJ190646 | |
| Herpothallon rubrocinctum (128) | Nelsen 4006, U.S.A. (F) | GU327693 | |
| Herpotrichia diffusa | DQ678071 | DQ384076 | |
| Hypocrea lutea | AF543791 | FJ713620 | |
| Hysteropatella cf. elliptica | DQ767657 | FJ190649 | |
| Kirschsteiniothelia aethiops | AY016361 | FJ190604 | |
| DQ678046 | FJ190590 | ||
| Lachnum virgineum | AY544646 | AY544745 | |
| Laurera megasperma | FJ267702 | ||
| Lecanactis abietina | AY548812 | AY548813 | |
| Lecanactis sp. | EU704091 | EU704059 | |
| Lecanora hybocarpa | DQ782910 | DQ912273 | |
| Macrophomina phaseolina | DQ678088 | FJ190645 | |
| Megalotremis verrucosa (104) | Lücking 26316, Colombia (F) | GU327718 | GU327694 |
| Monilinia laxa | AY544670 | AY544748 | |
| Mycomicrothelia hemispherica (102) | Lücking 28641, Nicaragua (F) | GU327719 | GU327695 |
| Mycomicrothelia miculiformis (101B) | Lücking 28637, Nicaragua (F) | GU327720 | GU327696 |
| Mycomicrothelia obovata (95) | Nelsen 4007a, Peru (F) | GU327721 | GU327697 |
| Mycosphaerella fijiensis | DQ678098 | FJ190656 | |
| Mycosphaerella punctiformis | DQ470968 | FJ190611 | |
| Myriangium duriaei | DQ678059 | AY571389 | |
| Nectria cinnabarina | U00748 | FJ713622 | |
| Opegrapha celtidicola | EU704094 | EU704066 | |
| Opegrapha filicina | EU704095 | EU704067 | |
| Opegrapha lithyrga | EU704096 | EU704068 | |
| Opegrapha varia | EU704103 | EU704075 | |
| Ophionectria trichospora | AF543790 | FJ713626 | |
| Peltigera degenii | AY584657 | AY584628 | |
| Penicillium freii | AY640958 | AY584712 | |
| Pertusaria dactylina | DQ782907 | DQ972973 | |
| Phaeotrichum benjaminii | AY004340 | AY538349 | |
| Phoma herbarum | DQ678066 | FJ190640 | |
| Phyllobathelium anomalum (242) | Lücking s.n., Panama (F) | GU327722 | GU327698 |
| Phyllobathelium firmum (HTL3175) | Lücking s.n., Panama (F) | GU327723 | |
| Pleospora herbarum var. herbarum | DQ247804 | FJ190610 | |
| Preussia terricola | AY544686 | AY544754 | |
| Pseudopyrenula subgregaria (106) | Lücking 24079, Thailand (F) | GU327724 | GU327699 |
| Pseudopyrenula subnudata | DQ328997 | ||
| Pyrenophora phaeocomes | DQ499596 | FJ190591 | |
| Pyrenophora tritici-repentis | AY544672 | FJ713605 | |
| Pyrenula pseudobufonia | AY640962 | AY584720 | |
| Pyrgillus javanicus | DQ823103 | FJ225774 | |
| Pyxine subcinerea | DQ883802 | DQ912292 | |
| Racodium rupestre | EU048583 | EU048588 | |
| EU048581 | |||
| EU048582 | EU048589 | ||
| Ramichloridium anceps | DQ823102 | FJ225752 | |
| Roccella canariensis | AY779328 | ||
| Roccella fuciformis | AY584654 | EU704082 | |
| Roccella montagnei (109) | Lumbsch 19700a, India (F) | GU327725 | GU327700 |
| Roccella tuberculata | AY779328 | ||
| Roccellographa cretacea | DQ883696 | FJ772240 | |
| Schismatomma decolorans | AY548815 | AY548816 | |
| Schismatomma pericleum | AF279408 | AY571390 | |
| Scorias spongiosa | DQ678075 | FJ190643 | |
| Scutellinia scutellata | DQ247806 | FJ190587 | |
| Simonyella variegate | AY584631 | ||
| Sphinctrina turbinate | EF413632 | FJ713611 | |
| Spiromastix warcupii | DQ782909 | FJ225794 | |
| Sporormiella minima | DQ678056 | FJ190624 | |
| Staurothele frustulenta | DQ823098 | FJ225702 | |
| Strigula nemathora (72) | Lücking s.n., Costa Rica (F) | GU327701 | |
| Strigula schizospora (73) | Lücking s.n., Costa Rica (F) | GU327702 | |
| Stylodothis puccinioides | AY004342 | AF346428 | |
| Sydowia polyspora | DQ678058 | FJ190631 | |
| Syncesia farinacea | EF081452 | ||
| Trematosphaeria heterospora | AY016369 | AF346429 | |
| Trematosphaeria pertusa | DQ678072 | FJ190641 | |
| Trimmatostroma abietis | DQ678092 | FJ190648 | |
| Trypetheliopsis kalbii (243) | Lücking s.n., Panama (F) | GU327703 | |
| Trypethelium eluteriae | DQ328989 | ||
| Trypethelium eluteriae (111) | Lumbsch 19701a, India (F) | GU327726 | GU327704 |
| Trypethelium marcidum | DQ329007 | ||
| Trypethelium marcidum (132) | Nelsen 4008, U.S.A. (F) | GU327727 | GU327705 |
| Trypethelium nitidiusculum (139) | Nelsen 4002a, U.S.A. (F) | GU327728 | GU327706 |
| Trypethelium papulosum (97) | Nelsen 4009a, Peru (F) | GU327729 | GU327707 |
| Trypethelium platystomum | DQ329009 | ||
| Trypethelium tropicum (25) | Nelsen 4003, Thailand (F) | GU327730 | GU327708 |
| Tubeufia cerea | DQ470982 | FJ190634 | |
| Tylophoron crassiusculum | EU670258 | ||
| Tylophoron moderatum | EU670256 | ||
| Tyrannosorus pinicola | DQ470974 | FJ190620 | |
| Vibrissea truncorum | FJ176874 | FJ190635 | |
| Westerdykella cylindrical | AY004343 | AF346430 | |
| Xylaria hypoxylon | AY544648 | AY544760 | |