Table 2.
Gene | Primer | Forward/reverse | Sequence (5′ to 3′) | Annealing temp (°C) | Purpose |
---|---|---|---|---|---|
cGHRL | PM1 | PM1F | tgctgaaggaccgaaaacaaa | 56 | SNP identification |
PM1R | gccttgacagatgccttagtg | ||||
PM2 | PM2F | aagaaagctggtaactgcactag | 55 | SNP identification | |
PM2R | ggtgggctggtggagtta | ||||
PM3 | PM3F | tgcgttctgctactctttttcat | 63 | SNP identification | |
PM3R | gggccaaggaggagtgtct | ||||
PM4 | PM4F | cggcagacactcctcctt | 57 | SNP identification | |
PM4R | gccatccttccaactgtgtatat | ||||
PM5 | PM5F | tatgcgttctgctactcttt | 58 | Genotyping by sequencing | |
PM5R | tggaagcgatcactatacc | ||||
PM6 | PM6F | catacagcaacaaaaggatac | 63 | Real time PCR | |
PM6R | tgtggttgtccttcagct | ||||
cGHSR | PM7 | PM7F | gtgggtcagggcatcaaactc | 58 | SNP identification and PCR-RFLP |
PM7R | tcgagggctgctgaattttatg | ||||
PM8 | PM8F | ggctcttcctttttggtttgtct | 60 | SNP identification and PCR-RFLP | |
PM8R | tcgccctctctctgattcacct | ||||
PM9 | PM9F | tgatgccactggtctgagaat | 58 | Genotyping by PCR-RFLP | |
PM9R | tatccagctgcccatgtaaat | ||||
PM10 | PM10F | tgggcgtcgagcatgagaat | 63 | Real time PCR | |
PM10R | ccacgactagcatcttcacag | ||||
Chicken β-actin | PM11 | PM11F | ccccaaagccaacagagaga | 63 | Real time PCR |
PM11R | ggtggtgaagctgtagcctctc | ||||
dGHRL | PM12 | PM12F | Genomic Walking Kit | According to the kit | Genomic Walking |
PM12R1 | ttccatcagttctagacgagt | ||||
PM12R2 | tgtttgtccatactcttgatact | ||||
PM12R3 | gcccctgctttatctgtatc | ||||
PM13 | PM13F | ccgcctggtgaagaaaac | 56 | RT-PCR | |
PM13R | aagcctacacatccacctgcaat | ||||
PM14 | PM14F | gaggcaagctgaaggacaaccaca | 54 | 3′ RACE | |
PM14R | 3′ RACE Kit | ||||
PM15 | PM15F | gctggttttcccgtgtaattc | 56 | RT-PCR | |
PM15R | tgtttgtccatactcttgatact | ||||
PM16 | PM16F | gctggttttcccgtgtaattc | 54 | Intron 1 amplification | |
PM16R | tgtttgtccatactcttgatact | ||||
PM17 | PM17F | tggtttggctggctctagt | 56 | Intron 2 amplification | |
PM7R | PM12R3 | ||||
PM18 | PM18F | aaagcaggggcagaagat | 57 | Intron 3 amplification | |
PM18R | PM12R2 | ||||
PM19 | PM19F | agggtcctggtccaaaaat | 54 | Intron 4 amplification | |
PM19R | PM12R1 | ||||
PM20 | PM20F | cgcatggtagccttcacacac | 56 | SNP identification and PCR-RFLP | |
PM20R | agccgatgggttagcagagag | ||||
PM21 | PM21F | tcggctccatcagttgcagttat | 56 | SNP identification | |
PM21R | cggcgatgtatttttgctgttg | ||||
PM22 | PM22F | tccccacgacagagtagtttgag | 56 | SNP identification and PCR-RFLP | |
PM22R | gccttcccctgcttcctaa | ||||
PM23 | PM23F | atagcagcattttagaagtga | 54 | SNP identification | |
PM23R | ttgcctcagcttttcact | ||||
PM24 | PM24F | cgtgtaattcctctctgctaa | 63 | Real time PCR | |
PM24R | cgatgtatttttgctgttgtt | ||||
dGHSR | PM25 | PM25F | cccctgagcaccaacgagt | 56 | Intron 1 amplification |
PM25R | ggcaaccagcagagtatga | ||||
PM26 | PM26F | Genomic Walking Kit | According to the kit | Genomic Walking | |
PM26R1 | cggaccgatgttctttctcttt | ||||
PM26R2 | gacgggcaggaaaaagaagac | ||||
PM26R3 | ggcccagaggatgaggatga | ||||
PM27 | PM27F | tggcgttctccgacctgctcat | 57 | SNP identification | |
PM27R | acacagaccctcagaaacac | ||||
PM28 | PM28F | cgggtggcttaaataacaacag | 56 | SNP identification | |
PM28R | tgccctttttcctcagtttctc | ||||
PM29 | PM29F | cggaccataattaaacacctgaa | 56 | SNP identification | |
PM29R | caggtagaagaggacaaaggaca | ||||
PM30 | PM30F | tggcgttctccgacctgctcat | 56 | Genotyping by PCR-RFLP | |
PM30R | acacagaccctcagaaacac | ||||
PM31 | PM31F | gcaggttgtttagatatggct | 56 | Genotyping by PCR-RFLP | |
PM31R | cgtgaaaaggcaaccagcagag | ||||
PM32 | PM32F | cccctgagcaccaacgagt | 63 | Real time PCR | |
PM32R | ccaccacaactaacattttcaca | ||||
Duck β-actin | PM33 | PM33F | acgccaacacggtgctg | 63 | Real time PCR |
PM33R | gggtccggattcatcatactc |