Table 1.
MITEs Found in Grapevine and Their Properties
| MITE Name | Average Length in bp (standard deviation) | Similarity to Autonomous TEs (%) | Approximate Copy Number | Total Coverage in kb | TIR Length | TSDs Length | Average Identity | ESTs Matching to MITEs | Representative | Coordinates | Repbase Name |
| mPifvine-1.1 | 715 (δ = 27.2) | 97 | 51 | 37.2 | 20 | 3 | 0.88 | 1 | AM485510.1 | 38610–37877 | Harbinger-1N1_VV |
| mPifvine-2.na | ∼1 kb | 93 | 65 | 91.7 | 26 | 3 | 0.77 | 2 | AM452748.2 | 1881–2798 | Harbinger-1N1_VV |
| mPifvine-3.1b | 274 (δ = 10.8) | 80 | 1,298 | 355.8 | 18 | 3 | 0.83 | ∼50 | AM468072.2 | 15068–15345 | Harbinger-3N1_VV |
| mPifvine-4.1 | 1243 (δ = 90.2) | 90 | 76 | 94.5 | 11 | 3 | 0.81 | 1 | AM450168.2 | 3569–4849 | VHARB-N4_VV |
| mHatvine-2.1 | 769 (δ = 14.4) | 94 | 22 | 16.9 | 23 | 8 | 0.92 | 2 | AM436283.2 | 16403–17173 | VIHAT2-N1_VV |
| mHatvine-3.1 | 740 (δ = 77.7) | 89 | 30 | 22.2 | 16 | 8 | 0.71 | 3 | AM458859.2 | 11690–12492 | VIHAT3-N1_VV |
| mHatvine-10.1 | 1274 (δ = 23.7) | 89 | 20 | 22.9 | 11 | 8 | 0.89 | 0 | AM432725.2 | 460–1725 | hAT-10N1_VV |
| mCactavine-4.1 | 3243 (δ = 23.8) | 94 | 30 | 97.3 | 6 | 3 | 0.84 | 31 | AM457287.1 | 34741–37976 | EnSpm-4N1_VV |
a
We have described 13 subfamilies of mPifvine-2 MITEs (see table 2).
b
Three additional subfamilies of mPifvine-3 accounting for around 2,000 copies were found using different methods. Details are given in the text.