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. 2009 Sep 2;1:325–339. doi: 10.1093/gbe/evp032

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© The Author(s) 2009. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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FIG. 8.— — Phylogeny of delta subunit of ATP synthase. In this example, low-light adapted Prochlorococcus strains form a monophyletic group. This would be an ideal scenario for an ecotype model: low-light adapted Prochlorococcus, high-light adapted Prochlorococcus, and marine Synechococcus form separate clades. There is also a conflict with plurality topology within the high-light adapted Prochlorococcus and marine Synechococcus clades. The tree was reconstructed in the PhyML program under JTT + G model with 100 bootstrap replicates. Bootstrap values below 70% are not shown.