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. 2009 Nov 26;38(3):e18. doi: 10.1093/nar/gkp1061

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© The Author(s) 2009. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 2. — Plots of simulated versus measured distances and BII populations. Measured internucleotide distances (Å) and BII populations (in percent) in the Jun-Fos oligomer were extracted from NOESY cross-peaks and from δP, respectively. These observables are compared to their simulated counterpart, whether obtained with a conventional refinement protocol (MD_ref) or with the new δP-based method (MD_δP). The NOE distances are divided into a group restrained in all MDs [ds(H2′), ds(H2′′) and ds(H6/8)] (leftmost panels) and the ‘Other’ distances restrained in MD_ref but not in MD_δP (middle panels). In ‘Other’ distances, H2_i-H1′_i₊₁ and H2′/2′′_i-H5_i₊₁ correspond to symbols Δ, and H1′_i-H6/8_i₊₁ and H1′_i-H4′_i₊₁ to symbols □.