Table 2.
Representation of genes which are significantly upregulated or downregulated by a factor of 2X in 24 dpa L i-1 cotton fiber relative to wild-type TM-1 fiber. (Genes with unknown function or no sequence homology are omitted.).
| GenBank | Description | Regulation | Fold Change | Functional Category |
|---|---|---|---|---|
| U73588 | SuSy Isoform | Up | 8.8 | Cytoskeleton |
| AF336286 | GhMYB36 | Up | 6.1 | Cytoskeleton |
| AF336286 | GaMYB38 | Down | 7.7 | Cytoskeleton |
| DQ13871 | Sucrose transport protein | Down | 4.7 | Cytoskeleton |
| AB022091 | Sucrose Synthase-2 | Down | 4.1 | Cytoskeleton |
| AL391142 | Gamma Tubulin Component | Down | 3.1 | Cytoskeleton |
| AF521250 | Alpha Tubulin | Down | 2.5 | Cytoskeleton |
| AY054693 | Beta Tubulin-9 | Down | 2.4 | Cytoskeleton |
| EU375992 | GhTub Beta tubulin 2 | Down | 2.1 | Cytoskeleton |
| NP177112 | EXPA1 | Up | 6.2 | Cell Structure/Organization |
| DQ02352 | Expansin-related gene | Down | 5.3 | Cell Structure/Organization |
| AF043284 | Expansin | Down | 4.1 | Cell Structure/Organization |
| AC152751 | Putative Kinesin Light Chain | Down | 3.7 | Cell Structure/Organization |
| NM_00106 | CesA7 | Down | 2.5 | Cell Structure/Organization |
| AY088211 | Anthocyanidin transferase | Up | 5.7 | Stress Response |
| AF336284 | Anthocyanin Regulatory Protein | Up | 5.6 | Stress Response |
| AY27540 | Flavonoid | Up | 4.8 | Stress Response |
| AY78110 | Ethylene Transcription Factor | Down | 5.9 | Signaling |
| NM1024 | Calmodulin-related protein | Down | 2.7 | Signaling |