Table 2.
Codon type | Initial exon | Internal exon | Final exon | ||||||
---|---|---|---|---|---|---|---|---|---|
dN | dS | dN/dS | dN | dS | dN/dS | dN | dS | dN/dS | |
CG containing codons in CGI | 0.131 | 0.512 | 0.257 | 0.097 | 0.910 | 0.106 | 0.100 | 0.800 | 0.125 |
CG containing codons out of CGI | 0.136 | 0.987 | 0.138 | 0.093 | 1.510 | 0.061 | 0.114 | 1.273 | 0.090 |
AG containing codons in CGI | 0.146 | 0.485 | 0.302 | 0.101 | 0.644 | 0.157 | 0.109 | 0.599 | 0.181 |
AG containing codons out of CGI | 0.134 | 0.508 | 0.264 | 0.087 | 0.535 | 0.164 | 0.112 | 0.533 | 0.210 |
GC containing codons in CGI | 0.130 | 0.381 | 0.342 | 0.098 | 0.534 | 0.183 | 0.101 | 0.503 | 0.201 |
GC containing codons out of CGI | 0.145 | 0.488 | 0.297 | 0.095 | 0.526 | 0.180 | 0.122 | 0.519 | 0.235 |
GA containing codons in CGI | 0.120 | 0.381 | 0.314 | 0.084 | 0.531 | 0.159 | 0.091 | 0.463 | 0.197 |
GA containing codons out of CGI | 0.114 | 0.450 | 0.252 | 0.075 | 0.489 | 0.154 | 0.096 | 0.479 | 0.200 |
All codons in CGIs | 0.097 | 0.344 | 0.282 | 0.073 | 0.468 | 0.157 | 0.074 | 0.443 | 0.167 |
All codons out of CGIs | 0.099 | 0.389 | 0.254 | 0.063 | 0.407 | 0.155 | 0.083 | 0.404 | 0.205 |
Rates were calculated separately for various gene elements and various classes of codons.