Table 3.
CAGE tags in different CGIs classes
| CGI class | 5prim | intragenic | 3prim | intergenic | total |
|---|---|---|---|---|---|
| #CGIs | 15686 | 3095 | 1808 | 6848 | 27437 |
| Fraction of CGIs, % | 57.17 | 11.28 | 6.59 | 24.96 | 100 |
| Total length of CGIs | 13853661 | 1483283 | 1124521 | 4482821 | 20944286 |
| Average GC-content, % | 66.66 | 65.8 | 66.53 | 66.39 | 66.08 |
| #CGIs with CAGE-tags | 13361 | 1327 | 1005 | 3509 | 19202 |
| Total length of CGIs with CAGE-tags | 12756213 | 784565 | 780040 | 2925761 | 17246579 |
| Fraction of total length of CGIs with CAGE-tags in class, % | 92.08 | 52.89 | 69.37 | 65.27 | 82.35 |
| Total CAGE-tags in CGI class | 698369 | 7300 | 6520 | 52377 | 764566 |
| Fraction of CAGE-tags in CGI class, % | 43.7 | 0.46 | 0.41 | 3.28 | 47.85 |
| CGIs with at least one CAGE-tag, % | 85.18 | 42.88 | 55.59 | 51.24 | 69.99 |
| Average CAGE-tags per CGI | 45 | 2 | 4 | 8 | 28 |
| Average CAGE-tags per CAGE-containing CGI | 52 | 6 | 6 | 15 | 40 |
| Density of CAGE-tags in CGIs, bp-1 | 0.0504 | 0.0049 | 0.0058 | 0.0117 | 0.0365 |
| Density of CAGE-tags in CAGE-containing CGIs, bp-1 | 0.0547 | 0.0093 | 0.0084 | 0.0179 | 0.0443 |
| One CAGE-tag per #bp | 20 | 203 | 172 | 86 | 27 |
Relative number of CGIs of different classes; CAGE tag representation and their frequency in different CGIs.