Table 1.
Proteins quantified with more than 1.5 fold changes, with GI numbers, protein names, average ratios and S.D. listed (Peptides used for the quantification of individual proteins are listed in Table S3).
| GI Number | Protein Name | Ratio (treated/untreated) |
|---|---|---|
| A. Histone and HMG proteins | ||
| 11321591 | HMG-2 | 1.65±0.26 |
| 968888 | HMG-1 | 1.85±0.07 |
| 223582 | histone H4 | 2.41±0.09 |
| 386772 | histone H3 | 2.80±0.42 |
| 356168 | histone H1b | 2.76±0.33 |
| 1568557 | histone H2B | 2.98±0.45 |
| 510990 | histone H2A | 4.21±0.54 |
| B. Translation-related proteins | ||
| 181969 | elongation factor 2 | 0.54±0.09 |
| 38202255 | threonyl-tRNA synthetase | 0.60±0.12 |
| 19353009 | Similar to elongation factor 2b | 0.62±0.06 |
| 4506707 | ribosomal protein S25 | 0.65±0.11 |
| C. hnRNPs | ||
| 386547 | d(TTAGGG)n-binding protein B39 | 0.50±0.22 |
| 119597533 | hnRNP U, isoform CRA_b | 0.59±0.01 |
| 55958547 | hnRNP K | 0.66±0.15 |
| D. Enzymes | ||
| 531202 | spermidine synthase | 0.57±0.18 |
| 41584442 | fatty acid synthase | 0.61±0.10 |
| 66392203 | NME1-NME2 protein | 0.64±0.18 |
| 1230564 | Gu protein | 0.64±0.14 |
| 2661039 | α-enolase | 0.65±0.07 |
| 190281 | protein phosphatase I α subunit | 0.66±0.02 |
| 4507789 | ubiquitin-conjugating enzyme E2L 3 isoform 1 | 0.67±0.06 |
| 5231228 | ribonuclease T2 precursor | 1.53±0.21 |
| 4758504 | hydroxysteroid (17-β) dehydrogenase 10 isoform 1 | 1.56±0.02 |
| 4503143 | cathepsin D | 1.65±0.08 |
| 186461558 | neutrophil elastase | 1.95±0.01 |
| 627372 | α-mannosidase precursor | 2.05±0.24 |
| 4504437 | heme oxygenase 1 | 2.32±0.78 |
| 12654715 | TXNDC5 protein | 3.14±0.35 |
| E. Others | ||
| 21755073 | unnamed protein product | 0.42±0.02 |
| 119587276 | hCG19802, isoform CRA_a | 0.47±0.20 |
| 35570 | unnamed protein product | 0.50±0.07 |
| 13477237 | ZNF607 protein | 0.52±0.05 |
| 194374111 | unnamed protein product | 0.57±0.11 |
| 35844 | unnamed protein product | 0.58±0.15 |
| 431422 | Ran/TC4 binding protein | 0.60±0.22 |
| 114645930 | PREDICTED: nucleosome assembly protein 1-like 1 isoform 9 | 0.60±0.02 |
| 2580550 | DEAD box, X isoform | 0.61±0.10 |
| 122168 | HLA class I histocompatibility antigen, B-58 α chain | 0.61±0.20 |
| 181486 | DNA-binding protein B | 0.63±0.07 |
| 193788267 | unnamed protein product | 0.63±0.08 |
| 801893 | leucine-rich PPR-motif containing protein | 0.63±0.10 |
| 5107666 | importin β | 0.63±0.20 |
| 1235727 | unnamed protein product | 0.64±0.10 |
| 40225729 | FUBP1 protein | 0.65±0.08 |
| 119571409 | hCG1643342, isoform CRA_a | 0.65±0.03 |
| 386777 | transplantation antigen | 0.66±0.05 |
| 1136741 | KIAA0002 | 0.66±0.20 |
| 23712 | myoblast antigen 24.1D5 | 0.66±0.08 |
| 13569879 | acidic (leucine-rich) nuclear phosphoprotein 32 family, member E isoform 1 | 0.67±0.08 |
| 4506773 | S100 calcium-binding protein A9 | 1.53±0.04 |
| 9955206 | Rho GDP-dissociation factor 2 | 1.55±0.19 |
| 8037945 | prothymosin α | 1.56±0.02 |
| 119239 | bone marrow proteoglycan | 1.71±0.08 |
| 28375485 | unnamed protein product | 1.81±0.22 |
| 4506191 | proteasome β10 subunit proprotein | 2.21±0.10 |
| 32111 | unnamed protein product | 4.90±0.96 |